Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00475 ATGATGTCAGCTGTAAAAATGGTTTCACGACATGAGACTCATACAAATTCAAACGGATTCCCTTTACAGAGAAACTACTGTTCACTTGCTTCCTCTGCTTCAACCAGAAATAAACTCCATAGAAACGTCGGGCGTTCCATGCGAACCATCCGCTCTAATTTTTTCCGGCATGACCAGAGTTGTTCTTTTACTTCAGATACCGGAAATTCCGGCTTTGTTTCTGAGAATCTAACTGAATCTGTTATAGACATGAGGCTCGGTGAGCTTGCATCCAAGACCAATCCATCGCTCAAATATTCTTCTAAACATGAGGAATTCCTAGACATTTCTCAGGCTTTCAGTGATTTTTCCGCTTGTAGCAGCGATATTTCCGGGGAGTTGCAGAGGCTAGCGAACTTGCCTATGCCGGACGATGTGCAGAATAGCAATGGAGAAGCAAGAGAAGTGGATGCTGATAGGGAACCAGAGCCGTGCTTGGGGTTTTTGCAGAGGGAGAATTTTTCGACGGAGATTATCGAGAGTATTTCGCCGGAAGATCTTCAACCGACGGTGAAGATTTGTATGGACGGGCTTCAATCTTCGTCGGTTGCGGTGAAGCGATCTGCAGCTGCCAAGATCAGGCTACTTGCAAAGAACCGAGCTGATAATCGAGCTTTGATTGGTGAGTCTGGTGCGATACCTGCTTTGATTCCTTTGCTTCGTTGTAGTGATCCATGGACACAAGAACACGCTGTGACTGCATTACTGAATCTTTCACTGCACGAAGGTAACAAGGCATTGATTACCCATGCTGGTGCTATCAAGTCATTGGTTTATGTATTGAAAACTGGGACTGACACTTCAAAAGAGAACGCTGCTTGTGCTTTGTTGAGCCTATCGTTGGTTGAGGAGAACAAGAGTTCAATCGGAGCTTGTGGGGCAATATCACCTCTCGTTGCATTGTTGTTGAGTGGGTCTAGCAGAGGGAAGAAGGATGCATTGACGACGCTTTATAAGCTTTGTTCTATTAAGAATAATAAAGAGAGGGCTGTCAGTGCTGGAGCTGTGAAACCACTTGTGAGTTTGGTGGTAGAACAAGGTACTGGATTAGCTGAGAAGGCAATGGTGGTTTTGAACAGTTTGGCTGGTATTGAACAAGGGAAAGAAGCAATTGTAGAGGAAGGTGGAATTGCGACACTTGTGGAAGCCATTGAAGATGGATCAATGAAAGGGAAGGAGTTTGCTGTTTTGACGTTGCTGCAGTTGTGTGTTGATAGCGTCAGGAATAGAGGGTTGTTGGTTAGAGAAGGTGGGATTCCTCCTTTGGTTGCTCTGTCACAGACCGGAAGTGTTCGAGCTAAGCACAAGGCTGAGACACTGCTGGTCTACTTGAGAGAGCCAAGACAAGAAGCATCCTCTTCACCTTAA 1407 0.4549 MMSAVKMVSRHETHTNSNGFPLQRNYCSLASSASTRNKLHRNVGRSMRTIRSNFFRHDQSCSFTSDTGNSGFVSENLTESVIDMRLGELASKTNPSLKYSSKHEEFLDISQAFSDFSACSSDISGELQRLANLPMPDDVQNSNGEAREVDADREPEPCLGFLQRENFSTEIIESISPEDLQPTVKICMDGLQSSSVAVKRSAAAKIRLLAKNRADNRALIGESGAIPALIPLLRCSDPWTQEHAVTALLNLSLHEGNKALITHAGAIKSLVYVLKTGTDTSKENAACALLSLSLVEENKSSIGACGAISPLVALLLSGSSRGKKDALTTLYKLCSIKNNKERAVSAGAVKPLVSLVVEQGTGLAEKAMVVLNSLAGIEQGKEAIVEEGGIATLVEAIEDGSMKGKEFAVLTLLQLCVDSVRNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLVYLREPRQEASSSP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00475 468 SMART arm_5 254 294 IPR000225 GO:0005515
Pte2g00475 468 SMART arm_5 377 417 IPR000225 GO:0005515
Pte2g00475 468 SMART arm_5 295 335 IPR000225 GO:0005515
Pte2g00475 468 SMART arm_5 213 253 IPR000225 GO:0005515
Pte2g00475 468 SMART arm_5 419 459 IPR000225 GO:0005515
Pte2g00475 468 SMART arm_5 336 376 IPR000225 GO:0005515
Pte2g00475 468 Gene3D - 324 459 IPR011989 -
Pte2g00475 468 Gene3D - 164 323 IPR011989 -
Pte2g00475 468 PANTHER U BOX DOMAIN-CONTAINING 145 455 - -
Pte2g00475 468 Pfam Armadillo/beta-catenin-like repeat 297 335 IPR000225 GO:0005515
Pte2g00475 468 Pfam Armadillo/beta-catenin-like repeat 215 252 IPR000225 GO:0005515
Pte2g00475 468 FunFam U-box domain-containing protein 4 323 464 - -
Pte2g00475 468 SUPERFAMILY ARM repeat 181 457 IPR016024 -
Pte2g00475 468 FunFam U-box domain-containing protein 4 170 322 - -
Pte2g00475 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 224 266 IPR000225 GO:0005515
Pte2g00475 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 389 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00475 Pte-Chr2 3654428 3657404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00475 161 462 U-box Gene Family AT2G23140 47.419 7.72e-80 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00475 - - qsa:O6P43_031331 706.057