Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00467 ATGATGTCGGAGGGGAAGACTATGGTGCTCCATGGTTATCCTGATGAAACTGTGAAATCCCTTCATGAACGACTTCAATCCATGACAGGAATTCCGGTTTTTGAGCAAAGATTGATATACAGAGGGAGGCAGCTTCAGTGGGAGCAGTCTCTTGCCGACTGTTCCATCGAAAACGACGCAAGTCTTCAATTGGTGGGTCGTATGCGAAGCACGGAGCACCCACAAGCTTGGCAGGTGGTAAACGACATGGTCTCTCTTGTATGCAGACTCTGCAAAGGTGAAATACTCCCTGATGCTCTAAAGACAATCAAAGGGTTGATAACTACTTACTTGAATTTGACTCCTAGGCCAGATAGTGATTCTGCGTCCGACTATTTCCAAATTTTTCTCTCTTCTTCTGCGCCAGCAGTGTTGGTGATGCTGTACATGTCTCCCCTTAAAGAAGCACTCTTGGGTCTTTATTGGAGACAATTGGCATCTCGCGCTGTAACGAAAATGTCAAGGGACAAATGCTCATGCAAGAGATTTTCCCTTTTGTTTGTGAGCTTGGATTTTGCTTGTTGA 564 0.4539 MMSEGKTMVLHGYPDETVKSLHERLQSMTGIPVFEQRLIYRGRQLQWEQSLADCSIENDASLQLVGRMRSTEHPQAWQVVNDMVSLVCRLCKGEILPDALKTIKGLITTYLNLTPRPDSDSASDYFQIFLSSSAPAVLVMLYMSPLKEALLGLYWRQLASRAVTKMSRDKCSCKRFSLLFVSLDFAC* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00467 187 Gene3D - 1 85 - -
Pte2g00467 187 SMART ubq_7 2 67 IPR000626 GO:0005515
Pte2g00467 187 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Pte2g00467 187 PRINTS Ubiquitin signature 48 69 IPR019956 -
Pte2g00467 187 PRINTS Ubiquitin signature 6 26 IPR019956 -
Pte2g00467 187 PRINTS Ubiquitin signature 27 47 IPR019956 -
Pte2g00467 187 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 9 145 - -
Pte2g00467 187 SUPERFAMILY Ubiquitin-like 4 83 IPR029071 -
Pte2g00467 187 Pfam Ubiquitin family 4 69 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00467 Pte-Chr2 3577379 3578102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00467 5 100 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.313 8.83e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00467 - - qsa:O6P43_012005 245.358