Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00444 ATGGCCAAAACGAAACCAGGAAGAAAAGATATGGAATCCTATCCCATCAAAGGTACCGACAAGGTTGTTATAGCTGGAGATTGTGTACTCATGCGTCCATCGGATACCAGTAAGCCTTCGTACGTGGCTCGTGTAGAAAAGATCGAAACAGACTGTAGGAACAACGTGAAGGTTCAAGTGAGGTGGTATTATAGGCCAGAAGAGTCTATTGGTGGACGGAGGCAATTTCACGGAGCTAAGGAGTTGTTCCTGTCAGATCACTATGACGTCCAGAGTGCTCAGACTATTGAAGGCAAATGTACTGTGCATTCATTCAAGAATTATACTAAGCTTGAGGATGTTGGAGCGGAAGACTACTATTGTAGATTTGAGTACAAGGCTGCGACTGGGAATTTTGCTCCTGACCGGGTGGCTGTGTATTGCAAATGTGAAATGCCTTACAACCCAGATGATCTAATGGTTCAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGCAATGAACATTGAGCAAGCAAAGAAACTAGACTGTTTTGTGTGTGCAGAATGCACATCTAATGAGAATACCAAGAAATCTCAAAATACAACGGCAGCACTGGGATCTGATGACAAGGTGGTGCCCAAGAGCAGGACATGA 645 0.445 MAKTKPGRKDMESYPIKGTDKVVIAGDCVLMRPSDTSKPSYVARVEKIETDCRNNVKVQVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAQTIEGKCTVHSFKNYTKLEDVGAEDYYCRFEYKAATGNFAPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVAMNIEQAKKLDCFVCAECTSNENTKKSQNTTAALGSDDKVVPKSRT* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00444 214 SUPERFAMILY FYVE/PHD zinc finger 130 191 IPR011011 -
Pte2g00444 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 202 IPR013083 -
Pte2g00444 214 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pte2g00444 214 PANTHER OS08G0421900 PROTEIN 1 202 - -
Pte2g00444 214 SMART PHD_3 140 187 IPR001965 -
Pte2g00444 214 SMART BAH_4 21 136 IPR001025 GO:0003682
Pte2g00444 214 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Pte2g00444 214 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 203 - -
Pte2g00444 214 Gene3D - 2 132 IPR043151 -
Pte2g00444 214 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Pte2g00444 214 FunFam Chromatin remodeling protein EBS 1 132 - -
Pte2g00444 214 Pfam BAH domain 24 135 IPR001025 GO:0003682
Pte2g00444 214 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00444 Pte-Chr2 3452439 3455959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00444 31 138 Core DNA Replication Machinery Family AT4G14700 28.440 4.51e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte2g00444 BAH 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00444 K25868 - gmx:100800806 375.555