Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00422 ATGATGCAGTCTGGAGGGCCTGGAATGGCGGCACCGCAACCCTCTCAGCAGTACCAGCAGTACCCGTACCAGCAGCAGCAGCCTTACATGATGATGCAGCCGCAGCCGCAGCCGCAGCAACAGATGCCGATGTGGCCTCATGTTCCTCAACAACAGCTACAGTCCGCGGTACCTCAGCAGACGGCTCTATCCTCCAGTGCCGATGAGGCCCGTACCCTGTGGATCGGTGATTTGCAAAGCTGGATGACCGAGCGATATCTTTATGATTGTTTCTCTCCTGCAGCTGAGGTTGCCAGCGTGAAAATCATCAGAAATAAGCAGACCGGTATTTCAGAGGGTTATGGATTTATCGATTTTACTTCTCGTGCTGCTGCTGAAATGGTACTTCAAGCATACAACGGAGCAGTCATGCCGCAGGCAGGGGTGAGCTACAGATTAAACTGGGCAACATTGAGTGCTGGAGAGAGACGACATGATGATTCTCCTGATTATACAATATTTGTGGGAGACTTGGCTGCAGATGTTAGTGATGTCATGCTAGAACAGACTTTCAAGAGCCGGTATACTTCAGTTAAGGGTGCCAAGGTTGTGATTGATAGGCTCACTAATCGATCAAAGGGTTATGGATTCGTTAAGTTTGCAGATGAAAGCGAACAAATTAGAGCTATGACTGAGATGAATGGTGTACTATGTTCAACCAGGCCAATGCGCATTGGCCCAGCAGCAAACAAGAATACGAGTGGGCAGCAGACTAGAGCTTCGTACCAGAATCAAGGAATACCGACAGACAGTGATCCAAACAACACTACCGTATTTGTTGGCAACTTAGATCCTAATGTTACTGATGATCTTTTGAGGCAAGTTTTTGGCCGATATGGGGATGTGATACATGTGAAGATACCAGCAGGCAAGCGATGCGGGTTTGTCCAGTTTGCTGACAGAAACTCTGCTGAGGAGGCACTACAGATGTTGAATGGAACCACATTGGGTGCATCGAATGTCAGACTATCATGGGGACGTAGCCCCACCAACAAACAGCCTCAGGTAGATCAAAACCAGTGGAATGGCGGTGGATATTATGGATATGCTACTCAGGGATATGAGAACTATGGTTATGCACCTGCTGCACAGGACCCCAATATGTATGGTGGTTATTCAGGGTATCCAAACTACCAGCCACCTCAACAACAGCAATCGGGATATAGCTAA 1209 0.4822 MMQSGGPGMAAPQPSQQYQQYPYQQQQPYMMMQPQPQPQQQMPMWPHVPQQQLQSAVPQQTALSSSADEARTLWIGDLQSWMTERYLYDCFSPAAEVASVKIIRNKQTGISEGYGFIDFTSRAAAEMVLQAYNGAVMPQAGVSYRLNWATLSAGERRHDDSPDYTIFVGDLAADVSDVMLEQTFKSRYTSVKGAKVVIDRLTNRSKGYGFVKFADESEQIRAMTEMNGVLCSTRPMRIGPAANKNTSGQQTRASYQNQGIPTDSDPNNTTVFVGNLDPNVTDDLLRQVFGRYGDVIHVKIPAGKRCGFVQFADRNSAEEALQMLNGTTLGASNVRLSWGRSPTNKQPQVDQNQWNGGGYYGYATQGYENYGYAPAAQDPNMYGGYSGYPNYQPPQQQQSGYS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00422 402 Gene3D - 245 349 IPR012677 -
Pte2g00422 402 FunFam Polyadenylate-binding protein RBP45C 156 248 - -
Pte2g00422 402 Gene3D - 9 159 IPR012677 -
Pte2g00422 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 345 - -
Pte2g00422 402 Gene3D - 163 239 IPR012677 -
Pte2g00422 402 MobiDBLite consensus disorder prediction 383 402 - -
Pte2g00422 402 CDD RRM2_SECp43_like 163 242 - -
Pte2g00422 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Pte2g00422 402 SMART rrm1_1 270 337 IPR000504 GO:0003723
Pte2g00422 402 SMART rrm1_1 165 239 IPR000504 GO:0003723
Pte2g00422 402 SMART rrm1_1 72 145 IPR000504 GO:0003723
Pte2g00422 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 333 IPR000504 GO:0003723
Pte2g00422 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Pte2g00422 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 137 IPR000504 GO:0003723
Pte2g00422 402 SUPERFAMILY RNA-binding domain, RBD 255 364 IPR035979 GO:0003676
Pte2g00422 402 SUPERFAMILY RNA-binding domain, RBD 31 150 IPR035979 GO:0003676
Pte2g00422 402 SUPERFAMILY RNA-binding domain, RBD 149 260 IPR035979 GO:0003676
Pte2g00422 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Pte2g00422 402 MobiDBLite consensus disorder prediction 241 265 - -
Pte2g00422 402 FunFam polyadenylate-binding protein RBP45 251 349 - -
Pte2g00422 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Pte2g00422 402 CDD RRM1_SECp43_like 72 150 - -
Pte2g00422 402 FunFam Polyadenylate-binding protein RBP45 6 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00422 Pte-Chr2 3278137 3281365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00422 165 334 Eukaryotic Initiation Factors Gene Family AT4G34110 27.778 6.85e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00422 - - gmx:100814743 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00422 2 3278137 3281365 Pte2g00422 2 3278137 3281365 RCT