Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00420 ATGGATACGGAAAATCTATTCGTTTCCCGAGAAATTTTTAGGCCACATGCGTTTCTGACTGGGAGTCTAGCAAATTCAATGAGGTCAGGAGCAAAACTGATGCCCAATGACCTCCCTCTGAAGCCGACATCTCTGTTATTCGATAGATTCAGAGCTTTGCTGAAGCGGAGAGAGAAGGAGATGAGGATTTCGGGTGATCCATACGTTCCGCCGCCTACTACGGACGAAATTGTACAGCTTTATGACTTGGTTTTATCCGAACTCACCTTCCATTCCAAACCTTTCATTACCGATCTTACCATCATTGCGGGAGAGCAAAGGGAACACGCCAAGGGTATTGCTGATGCAATTTGCTCTCGGATTATTGAGGCATCTGCTGAGGAGAAATTACCTTCACTCTACCTTTTAGACAGTATTGTCAAGATCATAGGTCAGGAATATGTGCACCACTTCTCTTTGCATCTACCTGAAGTATTCTGTGAGGCATACCAGCAAGTTCAGCCAAATTTGCATGATTCCATGCGCCATCTTTTCTGGACCTGGTCAGTGGTGTTTCCACCCTCAGTTCTCTCTAAAATTGAAGCTGAGTTACAATTGTCTCAAGCTGTGAACAACCGATCAGGTCCAAATGAAGTCAACACTTCTGAACCTTCTGGACCAACTCATGGAATACATGTCAACCAAAACCACATGAATGTTGATAGTATGAGAACTGAAATATTGAAATCAGTAAGAACTGTTGGTCTTGCAAATTCCATCCAAAGGCCTCAGATTCGTCCACATTCAACTGTTAGGCTTGGAATACCCCATTCTCATAGAATTGGACTTGACAGATCGTCATTATTATCCTTTGATGAATCTGCTGTTGACAACTCTAGCAGGATAGCCGGGGGAGAATCTCCATGCCGTGATGAGGAGTTGGCTGAATGGAGAAAGAAACAATTTAATGATAAAAGCTGTTGTAAACTTGAAATTTCCACCACCTACAGCCTTGGTACTGAAAATGAACATCAAAGTCCAAGATCTCTTGTTCATGCATACGGAAGTGACAGAAGAACAGAAATTTTAGGCAACAGGTCTTTGGCAGTGGAACAGCTGACTGTAAATGCCATAGACAAAAAGAAGACTAGAACCTCGTGGAAAAATTCAGAAGAGGAGGAGTTTGATTGGGAAGACATGAGTCCAACTTTTGTGGACCGAGCTAGGAGCAGTGATTTCTTGCCCTCACCTCATCCTCACCGTCCAGTCTCTGGTTGCCGACTCCCTTTTTCCACAGCAAATGCATCCACACTGGTGCTTGAAAGTAGGAACCATTGGTCTAGTGGGGCTCAATTACGACCAGGAGACGATTCTCCAACTGCAGCAGAGGAGTTGTATGGTCTTGGATGTAGGTCATCACGTGAATTAGCTGAATTTCAAACTAGGGCAAACCAGAACCTAGTTTCTCATCATTCCCATGATGCCTGGAACCCGCCATATAATCAGTCCCAACCTTCTCGATTCTTATTTCATGGTACGATAGGAGAAAAAGGTCTCCGTTTGCCTCCTCTTGCGGAGAAACCTCTCAGAGCCAATTTAAATCCTTATGGGCTTTCAGCTTTTGTTCCAAGTTTTAGCTCTTGCAGTCATGATTCTGTTAAGTTGAATTTAAATGTGCAAACCACTAGTCCATTGAACATAAATCCTGGTTTTCCATTCCAAAATCATGGTAGGAGTCAATGTTCAAGCATGATGAGTTCCTCACAGTTTTCTAATCAGTGCAATGGACTGTTTGCTGTAAATCAGAAAAATTCTGAACAAGTTACTTCATCGCAACTGCTGTTTCTTTCCAAGGATGAACATATGTCAAATGCATCCCCAGTTGTGCAGCTTCCTACAACGAGCAAATATACTTCCAACAATCCTTTTCTCTTACAAAGGGGAGCGTCATCTTCACTTCTAGGTGATTTTTCTGTTGCATCACGTGGGGAACCTCAACAAAACACTCCTTTTATCTTACACCAACCACCAAATATCTCTTCCTTTATTAATTCTCTCGTGGCTACAGATGTCCTTTCAGCAGAAACTCAAACCTCCATACAGGATTCTGTTGGAATTGAGTTCAATTCAGATGCGCTTAAAGTTCGTCATGAGTCGGCAATTCGCTCTCTGTACTCTGATCTCTGGCGACAGTGTACAACTTGTGGCCTTAGGTTTAAGTGTCAAGGGGAGCACAGGAGTCATATGGATTGGCATGTGACTAAGAATCGAATGTCTAAGAATCAGAAACAGAAATCATCTCGTAAGTGGTTTGTGAATCAGGGGATGTGGCTTACTAGTGCAGAGGCTCTTGGAACCGATGCTGTCCTTCGATTTTTGCCTCCAGAAATAGTGGAGGAAAAGAAAGAAAATGAAGAAATGGATGTGCCAGCTGAGGAGGAACAAAATGTATGTGCCTTGTGCGGGGAGCCTTTTGATGAATTCTACAGCGATGAAATGGAAGGGTGGATGTATAAAGGAGCTGTTTACTTGCATGCACCAAAGGGGTCTACAGTTGGTGTGGATAGGTCACAGTTAGGTCCTATTGTCCATTCTAAATGTAGGTCAGATTCTAGTGAGTTGTCCTCTGAGGATTTTGGACTCGTCGAAGGGGGACCAATGGAAGGTGGTAGTCAGCGAAAAAGACTGCGGATTAATTAG 2679 0.433 MDTENLFVSREIFRPHAFLTGSLANSMRSGAKLMPNDLPLKPTSLLFDRFRALLKRREKEMRISGDPYVPPPTTDEIVQLYDLVLSELTFHSKPFITDLTIIAGEQREHAKGIADAICSRIIEASAEEKLPSLYLLDSIVKIIGQEYVHHFSLHLPEVFCEAYQQVQPNLHDSMRHLFWTWSVVFPPSVLSKIEAELQLSQAVNNRSGPNEVNTSEPSGPTHGIHVNQNHMNVDSMRTEILKSVRTVGLANSIQRPQIRPHSTVRLGIPHSHRIGLDRSSLLSFDESAVDNSSRIAGGESPCRDEELAEWRKKQFNDKSCCKLEISTTYSLGTENEHQSPRSLVHAYGSDRRTEILGNRSLAVEQLTVNAIDKKKTRTSWKNSEEEEFDWEDMSPTFVDRARSSDFLPSPHPHRPVSGCRLPFSTANASTLVLESRNHWSSGAQLRPGDDSPTAAEELYGLGCRSSRELAEFQTRANQNLVSHHSHDAWNPPYNQSQPSRFLFHGTIGEKGLRLPPLAEKPLRANLNPYGLSAFVPSFSSCSHDSVKLNLNVQTTSPLNINPGFPFQNHGRSQCSSMMSSSQFSNQCNGLFAVNQKNSEQVTSSQLLFLSKDEHMSNASPVVQLPTTSKYTSNNPFLLQRGASSSLLGDFSVASRGEPQQNTPFILHQPPNISSFINSLVATDVLSAETQTSIQDSVGIEFNSDALKVRHESAIRSLYSDLWRQCTTCGLRFKCQGEHRSHMDWHVTKNRMSKNQKQKSSRKWFVNQGMWLTSAEALGTDAVLRFLPPEIVEEKKENEEMDVPAEEEQNVCALCGEPFDEFYSDEMEGWMYKGAVYLHAPKGSTVGVDRSQLGPIVHSKCRSDSSELSSEDFGLVEGGPMEGGSQRKRLRIN* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00420 892 SMART 558neu5 76 198 IPR006569 -
Pte2g00420 892 SUPERFAMILY ENTH/VHS domain 73 198 IPR008942 -
Pte2g00420 892 ProSitePatterns Zinc finger C2H2 type domain signature. 725 745 IPR013087 -
Pte2g00420 892 CDD CID_Pcf11 78 198 IPR047415 -
Pte2g00420 892 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Pte2g00420 892 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 867 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pte2g00420 892 Pfam CID domain 92 192 IPR006569 -
Pte2g00420 892 Gene3D - 71 199 IPR008942 -
Pte2g00420 892 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Pte2g00420 892 MobiDBLite consensus disorder prediction 861 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00420 Pte-Chr2 3260027 3266286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00420 667 890 C2H2 Transcription Factor Family AT4G04885 60.177 2.15e-84 286