Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00411 ATGGTGGCGTCCATGATGAAGCATGTGAAAAGAGCCTCAACAAGCTCGGGGCGCAAGAAAATTGAGATTAAGAAACTGGAGAAGGTCTCCAACAAGCAAGTCACTTTCTCAAAGCGCCGCAACGGTCTGTTTAAGAAAGCTAGCGAGTTATGTGTTCTGTGCAATGCTCATGTTGCCATTGTGGTGTTTTCTCCTGCTGGAAAAGTTTTCTGCTTTGGTCAACCAAACGTCGAGACCATCCTCAACCGCTATCTGAGAGGGCAGGCCTCCGATCAATCTTCTGTCACCGATAATGGGCGTCATCCCTTTTCCTATTGTGAACTGAATAGGCAATATGAAGAAGGGCTGAAGAAGCTTGAGCAGGAGAAGTTGCGGTTGAATGAGATGGAAGAGTATTTGAAGACTGGTTCTATGAGGAACTGGTGGCATGATCCCATCAATGACATGGGTATAAGAGAGCTTGACCAGTATACTATTTTTCTGAAAGAACTGACGAGGAACTTGGCAGGAAGGTTGGATGAGTTGCTGGTCAGGGCTTCTTTGCTGCCGTCTCCTTTGTTATATGAGGCAATTGAAAATCATGGAGGAGGGTTAAGCAAACATTATCAGTGTGAAAAACAGAAGGGTAGGGCTGATGAGGATCTGAACCTAGGGTTTTGA 660 0.4561 MVASMMKHVKRASTSSGRKKIEIKKLEKVSNKQVTFSKRRNGLFKKASELCVLCNAHVAIVVFSPAGKVFCFGQPNVETILNRYLRGQASDQSSVTDNGRHPFSYCELNRQYEEGLKKLEQEKLRLNEMEEYLKTGSMRNWWHDPINDMGIRELDQYTIFLKELTRNLAGRLDELLVRASLLPSPLLYEAIENHGGGLSKHYQCEKQKGRADEDLNLGF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00411 219 Coils Coil 109 129 - -
Pte2g00411 219 PANTHER MADS BOX PROTEIN 18 168 - -
Pte2g00411 219 FunFam Agamous-like MADS-box protein AGL62 28 94 - -
Pte2g00411 219 SUPERFAMILY SRF-like 17 92 IPR036879 GO:0003677|GO:0046983
Pte2g00411 219 Gene3D - 29 101 IPR036879 GO:0003677|GO:0046983
Pte2g00411 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Pte2g00411 219 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pte2g00411 219 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pte2g00411 219 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pte2g00411 219 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pte2g00411 219 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00411 Pte-Chr2 3184139 3184798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00411 15 172 Type I MADS-box Gene Family AT2G24840 45.679 1.44e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte2g00411 SRF-TF 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00411 - - pcin:129286086 189.119