Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00400 ATGCTGTTGCTATGGTTGTTAATAAATATTTGTATGTTTCTTGCGTGCCATTGCGGTAGGAATTGTATTCGTGTATTACCTATGGGAGCTCCAAAGCAGAAATGGACTCAAGAAGAAGAAGAAGCACTAAAAGCTGGAGTTATCAAGCACGGGCAAGGGAAATGGCGCACGATACTAAAAGATCCCGAGTTCAGCAGTGTGTTGTATCTGCGGTCAAATGTGGATCTCAAGGACAAATGGAGAAATATGTGTGTCATGCCACATGGCTATAACTCCAGGGAAAAGTCTAAGTTAGCACCGAGAAGAGCACACCAGGTTACTAGTCAGGACGAGAGCTCTTTGTCTCTAGTTGACGTTGTTCCTAGTGATGAAGAACTTGTGCATACTGTGCCTCTTCAAGTTTCAAATGATATGGTTCCAGTTTCTGATCCAAAGAGATCTATTGTAAGGTTAGACAACCTTATAGTGGAAGCTATAACTAGCTTGAATGAAGTCAGTGGTTCCTACAAGACAGCTATTGCTACATACATAGAGGATCAATATTGGGCCCCTTCTGAGTTTAAAAGACTATTATCTGCGAAGTTAAAGTACATGACTTCGGTTGGAAAACTGATTAAGGTTAAACGGAAATACATGGTTGCTCCTTTGCCAACAGCTTCCAGCGGAAGAAGGAACCCACGTGTGCTCTATTCTGATGGAAGGCAAAGAGACTCCCAGAAAATCGGGAAGGATGACATTGATATGCTTACAATGTCCCAGGTAGATCTAGAATTGGCCAAGATGAGGGCTATGACTACCAAAGAGGCTGCTTTAGTTGCTGCTAGAGCAGTTGCAGATGCAGAAGCTGCCATAGCACGAGCTGAAGAGGCTGAAAGAGACGCAGCAGCTGCAGAAGCTGATGCAGAGGCAGCCCAAGCGTTTGCAGATGCAACAATGGAGACTTTAAAAGGAAAGGGCACACCAAAAATGATGATCCGAGCTTGA 984 0.439 MLLLWLLINICMFLACHCGRNCIRVLPMGAPKQKWTQEEEEALKAGVIKHGQGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMCVMPHGYNSREKSKLAPRRAHQVTSQDESSLSLVDVVPSDEELVHTVPLQVSNDMVPVSDPKRSIVRLDNLIVEAITSLNEVSGSYKTAIATYIEDQYWAPSEFKRLLSAKLKYMTSVGKLIKVKRKYMVAPLPTASSGRRNPRVLYSDGRQRDSQKIGKDDIDMLTMSQVDLELAKMRAMTTKEAALVAARAVADAEAAIARAEEAERDAAAAEADAEAAQAFADATMETLKGKGTPKMMIRA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00400 327 SMART h15plus2 145 210 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte2g00400 327 Gene3D - 145 223 IPR036388 -
Pte2g00400 327 Coils Coil 273 307 - -
Pte2g00400 327 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Pte2g00400 327 SUPERFAMILY Homeodomain-like 29 89 IPR009057 -
Pte2g00400 327 Gene3D - 35 113 - -
Pte2g00400 327 CDD SANT_TRF 33 84 - -
Pte2g00400 327 Pfam Myb-like DNA-binding domain 32 82 IPR001005 -
Pte2g00400 327 SUPERFAMILY "Winged helix" DNA-binding domain 144 224 IPR036390 -
Pte2g00400 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 215 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte2g00400 327 FunFam Telomere repeat-binding factor 1 29 85 - -
Pte2g00400 327 Pfam linker histone H1 and H5 family 152 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte2g00400 327 PANTHER SINGLE MYB HISTONE 4 28 322 IPR044597 GO:0003691
Pte2g00400 327 SMART sant 31 86 IPR001005 -
Pte2g00400 327 FunFam Telomere repeat-binding factor 1 35 113 - -
Pte2g00400 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00400 Pte-Chr2 3086320 3089286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00400 28 328 Single Myb Histone (SMH) Gene Family AT1G49950 60.131 1.23e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte2g00400 Linker_histone 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00400 K09422 - cave:132177593 342.813