Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00398 ATGTCTGCCTTCGCAGGAACCACTCAGCAATGCACTGCCTGTGACAAGACCGTTTATCTCGTTGACAAGTTAACTGCAGATGGAAGAGTGTACCACAAGGCCTGCTTCCGGTGCCACCATTGCAGGAATACCCTTAAGCTAAGCAACTACTGTTCTTTTGAGGGAGTGCTCTACTGCAGACCACACTATGATCAACTCTTCAAGAGAACTGGAAGTCTTGACAAGAGCTTTGAAGCCACACCCAAAATAGTCAGGCCTGAAAAACAAGTAGATAAAGAGGGTGCCAAGGCAGTATCAAACTTGTTCTCAGGCACAAGGGACAGATGTGTGTGCTGCAATAAGACAGTGTATCCAATTGAGAAGGTTTCAGTGAATGCAACTGCTTACCATAAGAGCTGCTTCAAATGCTGCCACGGAGGCTGCACCATAAGCCCATCAAACTACATTGCACACGAGGGAAAACTCTACTGCAAGCATCATCACATTCAACTCTTCAAGGAGAAAGGAAACTACAGCCAACTTGAAAGTGAGAAAGACAAGAATGTAATCGCGGGAAAAGTCTCTTTGGAAATTGCATCTGAATTATAA 588 0.449 MSAFAGTTQQCTACDKTVYLVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEATPKIVRPEKQVDKEGAKAVSNLFSGTRDRCVCCNKTVYPIEKVSVNATAYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLESEKDKNVIAGKVSLEIASEL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00398 195 CDD LIM1_SF3 7 69 - -
Pte2g00398 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Pte2g00398 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Pte2g00398 195 PANTHER OS06G0237300 PROTEIN 4 94 - -
Pte2g00398 195 FunFam LIM domain and actin-binding 1 5 75 - -
Pte2g00398 195 SMART lim_4 108 160 IPR001781 -
Pte2g00398 195 SMART lim_4 10 62 IPR001781 -
Pte2g00398 195 FunFam LIM domain and actin-binding 1 103 173 - -
Pte2g00398 195 Pfam LIM domain 11 65 IPR001781 -
Pte2g00398 195 Pfam LIM domain 109 164 IPR001781 -
Pte2g00398 195 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Pte2g00398 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pte2g00398 195 Gene3D Cysteine Rich Protein 104 173 - -
Pte2g00398 195 Gene3D Cysteine Rich Protein 5 75 - -
Pte2g00398 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pte2g00398 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Pte2g00398 195 CDD LIM2_SF3 109 169 - -
Pte2g00398 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00398 Pte-Chr2 3075841 3078896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pte2g00398 LIM 8.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00398 K09377 - cave:132177345 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00398 2 3075841 3078896 Pte2g00398 2 3075841 3078896 RCT