Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00389 ATGGCTTTGCAAGCTTTGAATTGTCCAACTGCAGCTAGCCCTTTTAAAGTATATGAAGAAGAAGAAGACGTCGAGGTCCATTCGCTTGAGTCATGGGCTAAGAGAAAGCGATCAAAGCGATCCCGTATTGAAAACCCACCAACAGAGGAAGAGTACTTAGCTCTCTGTCTTATTATGCTTGCACAAGGCGGCGGCGGCGGCGGCAATAACAACAGCAGTGGCAGTGGCGGCGGTGATAGCCATAGCAATAGCAAGAGCTCTATTCATTCGCTCCGTGAAACACAAGCACCGCCTGTGAAATTGTCTTACAAGTGTTCTGTGTGCAACAAAGCCTTCCCTTCGTACCAAGCACTCGGAGGACACAAAGCAAGCCACAGGAAGTCTTCCTCGTCTGAAACTGCTTCAGCTGCAGCTGGCAACGTGGATAACGCCTCCACTTCCACCACCACCACCACTACTGCAGCAGTGACATCTGCTAACCCAAGCGGAAGGGCGCACGAGTGTTCTATCTGTCACAAGAGTTTTCCAACGGGTCAGGCTCTCGGGGGTCACAAGAGGTGCCACTATGACGGTGGCAACCATAGCACAGGTGCTGTAACATCACCAGAGGGCGTGGCATCGGCAAATTCCCATATCCACCGTAGTTTTGACTTGAACCTTCCAGCTCCTTTACTGGAATTGTCGCCAGTAATTGGCAGTGAATCTGTAAAATTTGCAAGAAAATTTTCAGAGGAACAAGAGGTGGAGAGTCCATTACCAGTTGCTAAGAAGCCTCATTTATTGTTTGCTTAA 792 0.4924 MALQALNCPTAASPFKVYEEEEDVEVHSLESWAKRKRSKRSRIENPPTEEEYLALCLIMLAQGGGGGGNNNSSGSGGGDSHSNSKSSIHSLRETQAPPVKLSYKCSVCNKAFPSYQALGGHKASHRKSSSSETASAAAGNVDNASTSTTTTTTAAVTSANPSGRAHECSICHKSFPTGQALGGHKRCHYDGGNHSTGAVTSPEGVASANSHIHRSFDLNLPAPLLELSPVIGSESVKFARKFSEEQEVESPLPVAKKPHLLFA* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00389 263 MobiDBLite consensus disorder prediction 129 162 - -
Pte2g00389 263 Gene3D Classic Zinc Finger 100 188 - -
Pte2g00389 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Pte2g00389 263 MobiDBLite consensus disorder prediction 66 93 - -
Pte2g00389 263 SUPERFAMILY beta-beta-alpha zinc fingers 103 188 IPR036236 -
Pte2g00389 263 MobiDBLite consensus disorder prediction 121 162 - -
Pte2g00389 263 MobiDBLite consensus disorder prediction 26 45 - -
Pte2g00389 263 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Pte2g00389 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Pte2g00389 263 SMART c2h2final6 103 125 IPR013087 -
Pte2g00389 263 SMART c2h2final6 166 188 IPR013087 -
Pte2g00389 263 MobiDBLite consensus disorder prediction 66 94 - -
Pte2g00389 263 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Pte2g00389 263 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 222 IPR044653 GO:0003700
Pte2g00389 263 Pfam C2H2-type zinc finger 165 190 - -
Pte2g00389 263 Pfam C2H2-type zinc finger 103 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00389 Pte-Chr2 3029881 3032148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00389 1 262 C2H2 Transcription Factor Family AT1G27730 44.649 3.46e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte2g00389 zf-C2H2_6 5.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00389 - - csin:114322691 218.394