Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00372 ATGGCAATCAGAAACCACAATGAACAATCACAATATAGTGAACAAGTTCCTTCTTTGCTACTGGATGCTCTCTACTGTAACGAAGAACAATGGGAGGACTTAGAAGAAGAAATAGTGGAAATTGTTGATGAAGAAAATGGTGTTTATATTAGGAATGATGATTATAAGTACTATCAAAATTATGAGGATAAACCATCTCTTCTTCCTTACCTCTTGTTGGAGCAAGATTTGTTCTGGGAAGATGAGGAACTACTTTCTCTCTTCGCCAAAGAACAGCAGCAACAAGAAGCTTGTTTCCGTGTGGACAACACTCATTTAGACTCTTCTGTCTGTGCAGCTCGTTCTCAAGCTGTGAACTGGATGCTCAAAGTCAATGCCCACTATGGATTCTCTGCTCTCACAGCGACATTAGCCATTAATTACTTTGATAGATTTCTTATGAGTCTTTATTTTCAAGGGGATAAGCCATGGACGATTCAACTTGTCGCTGTCACTTGTCTCTCCTTGGCTGCTAAAGTAGAAGAGACCCAAGTGCCTCTCCTCTTGGACCTACAAGTGGAGGGCACAAAGTTCGTTTTTGAGCCCAAGACAATTCAGAGAATGGAGTTACTTGTGCTCTCCACCCTGAAATGGGAGATGCACCCAGTGACTCCATTGTCGTTCCTAGATCACATTGTAAGGAGACTTGGATTGAAGAACAACATACATTGGGTTTTCCTTCACCGCTGTGAGCATCTCCTGCTCTCTGCACTCTCTGATTCGAGATTCATCAGTTACGTTCCTTCTGTATTGGCCACTGCAACGATGATGTACGTTATAGGTCAGATTGAGGAGACTGGTGGTGCGGACTACAAGAACCATCTTCTGAGTGTGTTAAACATTAGCAAGGAAAAAGTAAATGACTGTTTCAATCTCATCCTTGAGCTCTCAAATGCCAAGTATAGTTCACAATGTAACAAGAGAAACAAGCGCAGATATGATGAAATTCCAGGCAGCCCAAGTGGGGTGATTGATGCTGCTTTCATTTCTGATAGCTCCAATGATTCGTGGACAGTGGAGTCACTATTATATTTATCACCACAGCCTCCTCTGTTTAAGAAGGGCAGAATCCAAGAGCAGCAATTGAAAATGTCACCGCTAAACCGAGTTATTTTCTGA 1158 0.4206 MAIRNHNEQSQYSEQVPSLLLDALYCNEEQWEDLEEEIVEIVDEENGVYIRNDDYKYYQNYEDKPSLLPYLLLEQDLFWEDEELLSLFAKEQQQQEACFRVDNTHLDSSVCAARSQAVNWMLKVNAHYGFSALTATLAINYFDRFLMSLYFQGDKPWTIQLVAVTCLSLAAKVEETQVPLLLDLQVEGTKFVFEPKTIQRMELLVLSTLKWEMHPVTPLSFLDHIVRRLGLKNNIHWVFLHRCEHLLLSALSDSRFISYVPSVLATATMMYVIGQIEETGGADYKNHLLSVLNISKEKVNDCFNLILELSNAKYSSQCNKRNKRRYDEIPGSPSGVIDAAFISDSSNDSWTVESLLYLSPQPPLFKKGRIQEQQLKMSPLNRVIF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00372 385 CDD CYCLIN_AtCycD-like_rpt1 113 211 - -
Pte2g00372 385 SUPERFAMILY Cyclin-like 78 214 IPR036915 -
Pte2g00372 385 CDD CYCLIN_AtCycD-like_rpt2 216 306 - -
Pte2g00372 385 FunFam CYCLIN D32 215 304 - -
Pte2g00372 385 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Pte2g00372 385 FunFam D6-type cyclin 94 214 - -
Pte2g00372 385 Pfam Cyclin, C-terminal domain 216 326 IPR004367 -
Pte2g00372 385 Gene3D - 111 214 - -
Pte2g00372 385 SMART cyclin_7 119 207 IPR013763 -
Pte2g00372 385 SMART cyclin_7 220 308 IPR013763 -
Pte2g00372 385 Pfam Cyclin, N-terminal domain 103 213 IPR006671 -
Pte2g00372 385 SMART Cyclin_C_2 216 345 IPR004367 -
Pte2g00372 385 PANTHER CYCLINS 50 316 IPR039361 -
Pte2g00372 385 Gene3D - 215 304 - -
Pte2g00372 385 SUPERFAMILY Cyclin-like 217 318 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00372 Pte-Chr2 2874872 2876338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00372 1 325 Core Cell Cycle Gene Families AT4G34160 52.923 3.95e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00372 K14505 - qsa:O6P43_011756 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00994 14 31551578 31554797 Pte2g00372 2 2874872 2876338 RCT
Pte1g02523 1 45657263 45658799 Pte2g00372 2 2874872 2876338 RCT
Pte2g00372 2 2874872 2876338 Pte14g00994 14 31551578 31554797 RCT
Pte2g00372 2 2874872 2876338 Pte12g00328 12 2687375 2690422 RCT
Pte2g00372 2 2874872 2876338 Pte2g00372 2 2874872 2876338 RCT