Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00366 ATGGCCCAGGTTCCAGTTCAGCATCAGAATGTGATGTCCGGAGCTAACGGGGGTGCTACTGCACCAGTGCCCGCTGCAGCTGGTGGCCCGAATCAGTTCGCGACGACGTCGCTTTATGTTGGGGATCTTGACTCGAACGTCACGGATTCGCAGCTGTACGACCTGTTTAACCAAGTGGGTCAGGTGGTTTCTGTAAGGGTTTGCAGGGATATGTCTACCCGGAGATCACTTGGTTATGGCTATGTCAATTACAGCAATCCCCAAGATGCTGCTAGGGCGTTGGATATCCTGAACTTTACTCCTCTCAATTCAAAGACCATTCGAGTGATGTATTCTCATCGTGACCCCAGCATTCGCAAAAGTGGACAAGGGAATATATTCATCAAGAATCTAGACAAAGGGATTGATCACAAAGCACTTCATGACACGTTCTCTGCATTTGGGAATATACTCTCTTGCAAGGTAGCTACAGATTCCTCGGGCCAATCAAAGGGTTATGGCTTCATACAATTAGAAAACGAAGAAGCTGCTCAGAAAGCTATTGAGCAGTTGAATGGCATGCTGATGAATGATAAGCAAGTCTATGTGGGGCCATTTTTGCGAAAGCAAGACAGGGAAGGTACTTCCGATAAGACAAGTTTTAACAATGTTTATGTTAAGAATCTTTCAGAATCAACCACTGATGAAGACTTGAAGAAAACTTTTGGTGAATTTGGAACTATCACTAGCGCTGTGGTGATGAGGGATGCAGATGGGAAATCTAAATGTTTTGGATTTGTAAACTTTGAGAGTGCTGAAGATGCTGCTAGATCCGTTGAGGGTCTTAATGGGAAAAAGTTTGATGGTAAAGAATGGTATGTTGGGAAAGCACAGAAGAAATCTGAAAGAGAAATGGAATTGAAGCTTCGGTTTGAACAGAGTATGAAAGAGGCAGCTGACAAATACCAAGGGGCTAATCTATACGTGAAAAACTTGGATGATACTATTGGCGATGATAAACTTAAGGAATTGTTTTCACAATTTGGTACCGTCACCTCTTGCAAGGTCATGCGAGATCCAAATGGAATAAGCAGAGGGTCAGGATTTGTTGCATTCTCAACTCCCGAGGAGGCGTCTAGAGCTCTTTTGGAGATGAACGGGAAGATGATTGCTGCCAAACCTCTGTATGTTGCTCTCGCTCAACGTAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCTCAGATGAGGCCTGTTTCCATAGCTCCATCTGTTGCTCCTCGGGTGCCAATGTTCCCCCCTGGTGCTCCTGGAGTTGGACAGCAGATATTCTACGGTCAAGCCCCACCTGCTATGATTCCTTCACAGCCTGCATTTGGGTATCAGCAGCAACTTGTACCAGGTATGAGGCCGGGAGGGGCACCAATGCCAAACTTCTTTATGCCAATGGTTCAGCAGGGGCAGCAAGGTCAGAGACCTGGAGGCAGACGTGCAGGTGCTGTTCAACCGGCGCAGCAGCCTGTTCCCCTGATGCAGCAGCAGATGCTTCCAAGAAACCGTGTTTATCGCTATCCTACTGGCCGTGGTATCCCAGATGCCCCCATGCCTGGGGTGGGAGGAATGTTTCCTGTTCCATATGACATGGGTGGTGCACCTCTCCGGGAGACTTCAATTTCTCAGCCAATCCCCATTGGGGCTTTGGCTTCTGCCCTGGCAAATGCCACTCCCGAGCAGCAAAGAACAATGCTGGGTGAGAGTCTCTACCCTCTCGTCGACCAGTTCGAGCCTGATAATGCAGCAAAAGTAACAGGAATGCTGTTGGAGATGGATCAGCCAGAGGTTCTGCACTTGCTTGAATCACCTGAAGCTTTGAAAGCCAAGGTGGTAGAGGCTATGGAAGTACTCAGGAATGTAGCACAGCAGCAGCAGACAGCTGAGCAGTTGGCTTCCTTATCACTTAATGACAACCTTGTGTCTTGA 1962 0.476 MAQVPVQHQNVMSGANGGATAPVPAAAGGPNQFATTSLYVGDLDSNVTDSQLYDLFNQVGQVVSVRVCRDMSTRRSLGYGYVNYSNPQDAARALDILNFTPLNSKTIRVMYSHRDPSIRKSGQGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFIQLENEEAAQKAIEQLNGMLMNDKQVYVGPFLRKQDREGTSDKTSFNNVYVKNLSESTTDEDLKKTFGEFGTITSAVVMRDADGKSKCFGFVNFESAEDAARSVEGLNGKKFDGKEWYVGKAQKKSEREMELKLRFEQSMKEAADKYQGANLYVKNLDDTIGDDKLKELFSQFGTVTSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMIAAKPLYVALAQRKEDRRARLQAQFAQMRPVSIAPSVAPRVPMFPPGAPGVGQQIFYGQAPPAMIPSQPAFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRAGAVQPAQQPVPLMQQQMLPRNRVYRYPTGRGIPDAPMPGVGGMFPVPYDMGGAPLRETSISQPIPIGALASALANATPEQQRTMLGESLYPLVDQFEPDNAAKVTGMLLEMDQPEVLHLLESPEALKAKVVEAMEVLRNVAQQQQTAEQLASLSLNDNLVS* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00366 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 196 IPR000504 GO:0003723
Pte2g00366 653 FunFam Polyadenylate-binding protein 23 121 - -
Pte2g00366 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Pte2g00366 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Pte2g00366 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Pte2g00366 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Pte2g00366 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Pte2g00366 653 FunFam Polyadenylate-binding protein 553 635 - -
Pte2g00366 653 SUPERFAMILY RNA-binding domain, RBD 36 204 IPR035979 GO:0003676
Pte2g00366 653 CDD RRM3_I_PABPs 214 293 - -
Pte2g00366 653 Gene3D - 125 197 IPR012677 -
Pte2g00366 653 SUPERFAMILY RNA-binding domain, RBD 215 398 IPR035979 GO:0003676
Pte2g00366 653 SMART rrm2_1 37 110 IPR003954 GO:0003676
Pte2g00366 653 SMART rrm2_1 216 288 IPR003954 GO:0003676
Pte2g00366 653 SMART rrm2_1 125 197 IPR003954 GO:0003676
Pte2g00366 653 SMART rrm2_1 319 391 IPR003954 GO:0003676
Pte2g00366 653 SMART poly_2 569 632 IPR002004 GO:0003723
Pte2g00366 653 Gene3D - 30 124 IPR012677 -
Pte2g00366 653 CDD RRM4_I_PABPs 317 395 - -
Pte2g00366 653 Gene3D - 302 403 IPR012677 -
Pte2g00366 653 SMART rrm1_1 216 288 IPR000504 GO:0003723
Pte2g00366 653 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pte2g00366 653 SMART rrm1_1 319 391 IPR000504 GO:0003723
Pte2g00366 653 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pte2g00366 653 CDD RRM2_I_PABPs 122 198 IPR045305 -
Pte2g00366 653 CDD RRM1_I_PABPs 37 116 IPR034364 -
Pte2g00366 653 Gene3D - 200 301 IPR012677 -
Pte2g00366 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Pte2g00366 653 Gene3D - 553 636 - -
Pte2g00366 653 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Pte2g00366 653 SUPERFAMILY PABC (PABP) domain 499 640 IPR036053 GO:0003723
Pte2g00366 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Pte2g00366 653 FunFam Polyadenylate-binding protein 206 300 - -
Pte2g00366 653 FunFam Polyadenylate-binding protein 301 406 - -
Pte2g00366 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pte2g00366 653 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 630 IPR006515 GO:0003723
Pte2g00366 653 PANTHER RNA BINDING PROTEIN 35 98 - -
Pte2g00366 653 FunFam Polyadenylate-binding protein 122 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00366 Pte-Chr2 2846146 2849790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00366 1 648 Eukaryotic Initiation Factors Gene Family AT4G34110 69.800 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00366 K13126 - zju:107427042 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00366 2 2846146 2849790 Pte2g00366 2 2846146 2849790 RCT