Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00354 ATGGCCATCGTCCAAAAACGAAGAAGCCCTTCCAACTCTCCTTCCAAGGCTAAGCGTGGCAGACTGCCTAAGAAGGAGAAACTTTTAACAAAAGTGGGCTGTGCCTTTAGCCAGAATAATCGGAATACGAAGCAAGCAGCCTGTACGCCTTCAGAAATTGACTCCAGAAACAAACTGAAGAGAGCTGCTACAACTCATAGCTTATATGGAATTGCTAAACTTCGGTCGGTCTTCAAACGAGCACAAGAAGTTCAAGCTAATTTGGATCCGCGATTCCCAAGCATGATCAGGTGTATGCTCCCATCACACGTCACTCGAGGATTCTGGCTGGGTCTTCCCAAGAAATTTTGTGAAATGCATTTGCCGAAGAATGACTCCATTTTTGTATTGGAAGATGAAAGTGGTAAAGATCATGAAACAAAGTTTCTAGTTGAAAAGGCTGGCTTGAGTGCTGGATGGAGAGGGTTTTCCATATCTCATAACTTGCTTCCTGGAGATGTTTTGGTGTTTCAATTGGCAGAGGCTGCCAAATTTAAGGTATACATTTTAAGAAGAAATGGTTCAGATGAAGTGGACGGTGCCCTTTGCCTCCTGGAAAAAGACGGTTGCAAGAATCAAATGGATGATGATTTTCGCTGCAAAAATGAAATAGAGGAGGTGCCTTCTGCGACTGATAGGTTTCCATCTGAAAATGGTAGTGAAGATTTTAACTTGGAATGTCCGAATGGGATCAAATTATCAGAATCTGTTATAGACTTTAACAAAGTGAAAAGTGTGGACAATTTCAGCATTGTTGTTAATGGTTTGGTCATGGACTCGGAGTTCTCCAGTCACGTAAAAACCAAGTACTACCAGCTCTGTTGCAGTAAAAAATCTTTCCTTCACGATCATCTCCTTGAGGGACTTAACTCGAAGTTGATAACTGGAATGATATCTGAGACAATTAACATTGCTGATGCCATTAGAGCTTGTCAGATTACCACCTCACAGGAAAACTTTTCGACTTGGGACAAAACCTTGGCAGCTTTCCAGGTGATGGGGCTAAATGTTAGTTTCCTGCGGGCGCGGCTAAACCAGCTAAGCAACATCAGTCTGAAATCAAAGAGGTATGATGACGCTAGACATGAACTAGAACTTGTAAAAGCGGAGACGGAAACTCTTGAAGTGAAGCTGTTGGAAATGAAGAAAACAAGGTGCAGTCTCTGCACAGAAATCGAGACCATTCAAAAAATGAATCCTGAGAAGTTCAAAATTATGTTTCTGGAAGTTGCTAACGCCCCTTGGTGA 1287 0.4227 MAIVQKRRSPSNSPSKAKRGRLPKKEKLLTKVGCAFSQNNRNTKQAACTPSEIDSRNKLKRAATTHSLYGIAKLRSVFKRAQEVQANLDPRFPSMIRCMLPSHVTRGFWLGLPKKFCEMHLPKNDSIFVLEDESGKDHETKFLVEKAGLSAGWRGFSISHNLLPGDVLVFQLAEAAKFKVYILRRNGSDEVDGALCLLEKDGCKNQMDDDFRCKNEIEEVPSATDRFPSENGSEDFNLECPNGIKLSESVIDFNKVKSVDNFSIVVNGLVMDSEFSSHVKTKYYQLCCSKKSFLHDHLLEGLNSKLITGMISETINIADAIRACQITTSQENFSTWDKTLAAFQVMGLNVSFLRARLNQLSNISLKSKRYDDARHELELVKAETETLEVKLLEMKKTRCSLCTEIETIQKMNPEKFKIMFLEVANAPW* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00354 428 CDD B3_DNA 93 184 IPR003340 GO:0003677
Pte2g00354 428 Pfam B3 DNA binding domain 98 186 IPR003340 GO:0003677
Pte2g00354 428 Gene3D - 75 187 IPR015300 -
Pte2g00354 428 SMART B3_2 95 186 IPR003340 GO:0003677
Pte2g00354 428 ProSiteProfiles B3 DNA-binding domain profile. 95 186 IPR003340 GO:0003677
Pte2g00354 428 SUPERFAMILY DNA-binding pseudobarrel domain 90 189 IPR015300 -
Pte2g00354 428 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 186 IPR044837 -
Pte2g00354 428 Coils Coil 370 390 - -
Pte2g00354 428 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00354 Pte-Chr2 2685857 2688457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00354 77 210 B3 DNA Binding Superfamily AT3G19184 45.255 3.88e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte2g00354 B3 6.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00354 - - qsa:O6P43_011706 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00966 14 31288791 31291550 Pte2g00354 2 2685857 2688457 RCT
Pte2g00354 2 2685857 2688457 Pte2g00354 2 2685857 2688457 RCT