Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00344 ATGGCTCAACCAAGTAATGGTGGGGATCTGAATCAGCGTCAGCATCCACAGCAGCAGCAATGGATGCAGCCGCATCAGTATCAACAGCAATGGATGGCCATGCAGTATCCAGCCGCAGCTATGGCTATGATGCAGCATCAGATGATGATGTATCCACAGCATTACATGGCTTATGGTCACCACCCTTATCAACCATCTCATTACCCTCTGAAGCCCCGACATCAACAGCAGCAGCAGAAGCAAGTGTCACCAGACGAGGTCAAGACGATCTGGGTGGGAGATCTTCATCATTGGATGGACGAGAACTACCTCCATAGCTGTTTTGCTCACACTGGGGAGGTATTTTCAGTGAAGGTTACACGGAATAAGCAAACTGGGCTGTCAGAGGGTTATGGATTTGTAGAATTCTATTCCCGTGCAACAGCCGAAAAGGTGTTGCAAGGCTATAACACTGCTACAATGCCAAATACTGATCAACCTTTCCGTTTAAACTGGGCTACCTTTAGTACTGATGAACGGAAAACTGATGCTGGATCTGATCTTTCTATATTTGTTGGGGACCTAGCTGCAGATGTTACTGATTCAGTTCTGCAGGAAACCTTTGCCAGCAGATTCTCATCTGTCAAGGCAGCGAAAGTTGTGGTTGATTCTAATACTGGCCGATCAAAAGGTTATGGATTTGTGAGATTTGGGGATGAAAATGAAAGAACCAGGGCTATGACTGAAATGAATGGTATTTATTGTTCAAGTAGACCTATGAGAATAGGGGTCGCAACCCCCAAGAAATCATTTGGATATCAACAACAGTATTCTTCACAAGCTGTTGTGTTGGCTGGTGGGCATTCCTCAAATGGTGCTATGGTCCATGTTTCCCAGTCTGAAGGAGATTCAAATAACACAACATTATTTGTTGGAGGGTTAGATTCTGAAATTGGTGATGAAGAACTAAGACAACCGTTTTTGCAATTTGGTGAGGTTATATCTGTGAAAATACCTGCGGGTAAAGGCTGCGGTTTTGTGCAATTTGCTGACAGAAAGTGTGCTGAGGAAGCAATTCAGGGTTTGAATGGGACAGTTATCGGCAAGCAGACAGTTCGTCTTGCCTGGGGACGCACCCAAGCAAATAAGCATTGGAGAAATAATTCTGGTCACCAGTGGAACGGACCTTATGGACAGGGTAATGGAGGCTATGGATATGCAGCACCGCAAATTCAGGATGTGAGCATACAAGTTGCAGCTGCTACAGTTGAAGAGACATCCTAA 1263 0.4513 MAQPSNGGDLNQRQHPQQQQWMQPHQYQQQWMAMQYPAAAMAMMQHQMMMYPQHYMAYGHHPYQPSHYPLKPRHQQQQQKQVSPDEVKTIWVGDLHHWMDENYLHSCFAHTGEVFSVKVTRNKQTGLSEGYGFVEFYSRATAEKVLQGYNTATMPNTDQPFRLNWATFSTDERKTDAGSDLSIFVGDLAADVTDSVLQETFASRFSSVKAAKVVVDSNTGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKSFGYQQQYSSQAVVLAGGHSSNGAMVHVSQSEGDSNNTTLFVGGLDSEIGDEELRQPFLQFGEVISVKIPAGKGCGFVQFADRKCAEEAIQGLNGTVIGKQTVRLAWGRTQANKHWRNNSGHQWNGPYGQGNGGYGYAAPQIQDVSIQVAAATVEETS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00344 420 Gene3D - 281 401 IPR012677 -
Pte2g00344 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Pte2g00344 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 253 IPR000504 GO:0003723
Pte2g00344 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 365 IPR000504 GO:0003723
Pte2g00344 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 156 IPR000504 GO:0003723
Pte2g00344 420 SUPERFAMILY RNA-binding domain, RBD 292 398 IPR035979 GO:0003676
Pte2g00344 420 SUPERFAMILY RNA-binding domain, RBD 48 171 IPR035979 GO:0003676
Pte2g00344 420 SUPERFAMILY RNA-binding domain, RBD 178 281 IPR035979 GO:0003676
Pte2g00344 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
Pte2g00344 420 CDD RRM2_SECp43_like 180 259 - -
Pte2g00344 420 FunFam Polyadenylate-binding protein RBP47B 169 271 - -
Pte2g00344 420 CDD RRM1_SECp43_like 89 169 - -
Pte2g00344 420 FunFam Polyadenylate-binding protein RBP47 282 400 - -
Pte2g00344 420 Gene3D - 180 257 IPR012677 -
Pte2g00344 420 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Pte2g00344 420 SMART rrm1_1 182 256 IPR000504 GO:0003723
Pte2g00344 420 SMART rrm1_1 89 164 IPR000504 GO:0003723
Pte2g00344 420 SMART rrm1_1 301 368 IPR000504 GO:0003723
Pte2g00344 420 MobiDBLite consensus disorder prediction 1 23 - -
Pte2g00344 420 Gene3D - 87 167 IPR012677 -
Pte2g00344 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Pte2g00344 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 76 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00344 Pte-Chr2 2626566 2630774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00344 89 377 Eukaryotic Initiation Factors Gene Family AT2G36660 24.490 3.06e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00344 - - qsa:O6P43_031013 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00344 2 2626566 2630774 Pte2g00344 2 2626566 2630774 RCT