Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00324 ATGAAGCCACCGGTATTTCAATTTCACCGGTGGGCCCCATCGCCATCTCCTTCACCTTCACCTTCACCTTCTACTGCTCCCTCCTTTACTTATTCAACCACAGCCCTATCACCGTCCTTGGCTGCTTCGGTTCAAGATGAATTCTCGCCATCCTCGCCGTCCAGATCACCTGTTGACTTTAGTCCACCATTGATAGTAATGGTTGTGGTCGTGGCAGCTGCTTTTCTCGTTGTAACATATTCCCGCCTTATCTCCCGCCATCTAGTACCTCCTATAATCCACCTGCTACGCAGGTGGCGCCGCCGTCGACGGAGAAGGCCCTCCTCGTTCCTACCTTCGTCGTCTGGAGACCTTGACTCGCTTCCTTACGATTCATCTCCATTTGACCAAATCACCGATGGCTTCCACGTGCTATCTACTTATGGTCTTGATGATGGTGTGATCAAGACGATACCTCTATCCATCTACGCGGCAGATTCTAACAACGAGTCTCGTCGAGACTGTGCGGTGTGTCTGTTGGAATTTGAAGAGGACGATTACGTTCGCACGCTTCCTGTTTGTTCGCACGCATTTCATGTGGACTGCATCGACGTTTGGCTAAGGTCGCACGCCAACTGTCCTCTGTGCCGTGCTGGAATATTCTGTTCTCAATCTCCGTTCATCCCCTTGATGGCAGCTAGGATTAGGCCAAGCCTCGATGACGATTCAATTCTTCACAGGATCAGTAGGGAGCCTCTTGTAGAAGCTCCGGCACCACCGTCACGCTCATCCGTGTCCGAGATCACCCCTTGCATGGAAGAGCAGTCGCCGCGGAGAAACAACTGTAATTCAGAGGGTCGTTTAGACGGTCGCGATTTCCTATTGAAGCGATCCTACTCTTTCGGATTTGAAAGGAGCTTAGCGTCAGATAGAATGGTGATGGAACCAGCAACAGCTTCGCCATGGAGGTACAGAAGAGGAAGCAGTAGCTTCTGGAGCAAACGCCCATCCCCTTTCGGATCATTGGGAATGAAGTCCAGAGTCTTCTCATTCAGATACTACAGAGGTATGAAATCACCGTTCTTTCGACGGAGGGGGTTCTTTCCATTATCTGAATCAAGCGTGAGGTTCGCCGGAGGTGGAGGGAGCTCATCGCGACGGAGCAAGTCATCGTTAGTGGCTAGCCCAATGTTTTTAAGGCCGTCAGCTTTGACATCCACTACTGGAATAACTGCGTTCTCATCAAGCCGTCTACGGTGCGGTGATCCGGAGGCTCTGTTATCACCGGAGAGGTTCAACAGAAGATAA 1287 0.5113 MKPPVFQFHRWAPSPSPSPSPSPSTAPSFTYSTTALSPSLAASVQDEFSPSSPSRSPVDFSPPLIVMVVVVAAAFLVVTYSRLISRHLVPPIIHLLRRWRRRRRRRPSSFLPSSSGDLDSLPYDSSPFDQITDGFHVLSTYGLDDGVIKTIPLSIYAADSNNESRRDCAVCLLEFEEDDYVRTLPVCSHAFHVDCIDVWLRSHANCPLCRAGIFCSQSPFIPLMAARIRPSLDDDSILHRISREPLVEAPAPPSRSSVSEITPCMEEQSPRRNNCNSEGRLDGRDFLLKRSYSFGFERSLASDRMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGMKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRFAGGGGSSSRRSKSSLVASPMFLRPSALTSTTGITAFSSSRLRCGDPEALLSPERFNRR* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00324 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 215 IPR013083 -
Pte2g00324 428 PANTHER RING-H2 FINGER PROTEIN ATL16 47 229 IPR044600 GO:0016567|GO:0016740
Pte2g00324 428 MobiDBLite consensus disorder prediction 1 31 - -
Pte2g00324 428 Pfam Ring finger domain 167 210 IPR001841 -
Pte2g00324 428 CDD RING-H2_EL5-like 167 210 - -
Pte2g00324 428 MobiDBLite consensus disorder prediction 255 276 - -
Pte2g00324 428 SUPERFAMILY RING/U-box 161 216 - -
Pte2g00324 428 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Pte2g00324 428 SMART ring_2 168 209 IPR001841 -
Pte2g00324 428 MobiDBLite consensus disorder prediction 248 276 - -
Pte2g00324 428 FunFam RING-H2 finger protein ATL65 136 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00324 Pte-Chr2 2487274 2489672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00324 57 428 C3H Transcription Factor Family AT3G18930 49.878 1.18e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00324 - K19041 cave:132185255 503.442