Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00320 ATGAATAGCGAAGGTGATTATTTTTACTCCGATCAGGAGTCTCTTGACGGAATTGAAAACGACGACTCTGATTTTCAGTTGGTTCAACCAAAGGGTCCCTGTACCCAGCATTTGCAGGTAATTACGAAGGAATCACTTTTAGCTGCCCAGAGGGAGGATTTGCGTAGAGTGATGGACATGCTATCTTTGCGAGAGCACCATGCACGTACCCTGCTTATATATCATCGTTGGGATGTTGAGAAGTTGTTTTCTGTGTATGTTGATAAAGGGAGATCTTTCTTATTTGGCCAAGCTGGTGTTAGTTTGAATGAACGCCAAGGACGGGATTCGCCATCTCCTTCTACAACAACATGTGAAATCTGCTTCGATGATATTCCAAGTGGTAAAGCTACCAGAATGGATTGTGGTCATTGCTTTTGCAACGCCTGCTGGACAGAACATTTTGTGGTCAAGATTACAGAGGGCCAAAGTAAGCGAATAAGGTGCATGGCCCATAAATGCAATGCTATATGTGATGAATCTGCTGTTAGAAATTTAGTCAGCAAAAAAGATCCTGGGATGGCGGAAAAGTTTGATCGGTTCCTTCTGGAATCTTATATTGAAGATAATAAGAGGGTCAAATGGTGCCCCAGTATTCCTCATTGTGGGAATGCTATACGTGTTGGTGATGACGACTTATGTGAAGTAGAGTGTTCATGTGGATTACAATTTTGCTTTAATTGTTTATCACAGGCGCATTCACCTTGCTCATGCACGATGTGGGAACTTTGGACCAAGAAGTGTCGTGATGAATCAGAAACTGTTAATTGGATAACAGTTCACACCAAGCCTTGTCCAAAGTGCCACAAACCAGTGGAGAAGAATGGTGGCTGCAATCTTGTTAGCTGTATCTGTGGCCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGGGATCATACTTGGTCAAGTATTGCTGGTCATAGTTGTGGTCGCTTCAAAGATCAAGAGAATAAATCCGAAAGGGCAAAGCGGGATCTGTATCGGTATATGCACTATCATAACCGCTACAAGGCTCACACTGATTCCTTTAAGCTTGAAAATAAACTCAAAGAGACCATACAAGAGAAGGTTAATATTTCAGAAGAGAGGGAGTCTAGGTTAAGAGACTATAGCTGGGTGCATAATGGACTCAATCGACTTTTCAGATCTAGGCGTGTACTTTCATATTCATATCCATTTGCATATTATATGTTTGGAGATGAGCTTTTCAAGGATGAGATGACTCCGAAAGATAGGGAAATAAAACAACATTTATTCGAAGATCAGCAACAGCAACTGGAAGCAAATGTTGAAAAACTCTCCAAGGTTTTAGAGGAGCCATTTGACCAGTATGGGGATGATAGAGTCATGGAGATAAGAATGCAAGTCATCAATCTGTCCGGAATTGTTGATAACCTTTGTCAGAAAATGAATGACTGCATTGAGAATGATTTATTGGGTTCCTTGCAACTCGCGATACATAATATTGCTCCATACAAGTCCAAGGGTATTGAGCGGGCATCAGAACTTTCTGTTTTCTGGAGTAATAAAGCTGGTGATAACGGTAATTGTCTTTCGTCAGTTTTTAAGTATGCTAACTTCTTGACAAGTTTGCATTTTTGTTTGTTGCTTCAGTTACTTAGCTATCATATGATGAACATATCCTACAACTATATTGTTGCGCAACTCATGTGGCACATTTTATGCAGTACTCTAGCTTGA 1746 0.4107 MNSEGDYFYSDQESLDGIENDDSDFQLVQPKGPCTQHLQVITKESLLAAQREDLRRVMDMLSLREHHARTLLIYHRWDVEKLFSVYVDKGRSFLFGQAGVSLNERQGRDSPSPSTTTCEICFDDIPSGKATRMDCGHCFCNACWTEHFVVKITEGQSKRIRCMAHKCNAICDESAVRNLVSKKDPGMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVGDDDLCEVECSCGLQFCFNCLSQAHSPCSCTMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRFKDQENKSERAKRDLYRYMHYHNRYKAHTDSFKLENKLKETIQEKVNISEERESRLRDYSWVHNGLNRLFRSRRVLSYSYPFAYYMFGDELFKDEMTPKDREIKQHLFEDQQQQLEANVEKLSKVLEEPFDQYGDDRVMEIRMQVINLSGIVDNLCQKMNDCIENDLLGSLQLAIHNIAPYKSKGIERASELSVFWSNKAGDNGNCLSSVFKYANFLTSLHFCLLLQLLSYHMMNISYNYIVAQLMWHILCSTLA* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00320 581 SUPERFAMILY RING/U-box 189 257 - -
Pte2g00320 581 Pfam Ariadne domain 328 533 IPR045840 -
Pte2g00320 581 Gene3D - 247 494 - -
Pte2g00320 581 FunFam RBR-type E3 ubiquitin transferase 247 494 - -
Pte2g00320 581 CDD Rcat_RBR_ARI1-like 272 325 - -
Pte2g00320 581 CDD RING-HC_RBR_TRIAD1 116 169 - -
Pte2g00320 581 ProSiteProfiles TRIAD supradomain profile. 114 328 IPR044066 -
Pte2g00320 581 Pfam IBR domain, a half RING-finger domain 189 251 IPR002867 GO:0008270
Pte2g00320 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 202 IPR013083 -
Pte2g00320 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 406 IPR031127 GO:0004842|GO:0016567
Pte2g00320 581 SUPERFAMILY RING/U-box 113 201 - -
Pte2g00320 581 CDD BRcat_RBR_ANKIB1 196 260 - -
Pte2g00320 581 ProSiteProfiles Zinc finger RING-type profile. 118 166 IPR001841 -
Pte2g00320 581 FunFam RBR-type E3 ubiquitin transferase 112 203 - -
Pte2g00320 581 SUPERFAMILY RING/U-box 259 316 - -
Pte2g00320 581 SMART ibrneu5 189 251 IPR002867 GO:0008270
Pte2g00320 581 SMART ibrneu5 259 324 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00320 Pte-Chr2 2457013 2460944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00320 58 535 ARIADNE family AT2G16090 72.727 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00320 K11968 - qsa:O6P43_030968 927.161