Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00319 ATGTCTGAAACAATATCTGGAGACCCTTCTTCTTGTTCTAATCAGATGACTAATCAAAATGCGAGCTTGTCATCAACTCATAACGCAAGCAATAGTAACAGCGAGAGACTTGATAATGCTACTAGATTTGAATGCAATATCTGCATTGAATTAGCCCATGACCCTGTTGTTACTCTCTGTGGTCATCTTTACTGTTGGCGATGCCTGTACAGATGCCTTCATATTCGTGCAGACAGCCATGAATGTCCAGTTTGTAAAGCTCGTATAGAGAAGGAGAAACTGGTTCCTCTTTATGGAAGAGGTAAACCAAGTTCAGATCCCATCACATCAACAACTACATCCCACATGGATAATCTTCCTCAACGCCCCACTGGGTTAAGACCTGCAACATCTACACCTGCAGCCGCAAATCCATTGGCTCGGCAGGGTGGTGTTGCCAATTTGGGAGAAGGAACTGCAGGACTAGGAGGTTCCACTGCCATGCATTCAGTAACTGCAGGGTTTGGGAACATGACGGTGCCATCTTCTGGCTTTGGTGGAATCTTTCCAGCTATGTTTCCATTATTGTTTAACCTTCATGTACATGGATTCAATGATGCAACTGTGTATGGAACAACTTCAGGTTTTCCTCACGGGTTCTATTACTCCTTCCATGGAGGTCTTGCCCCTGGATTCCATCAACAACATGCCAGAGAAGTTGGGCAGTCATACTCATCCATTTTTGCATTTGGGTTAATCTTTTTAGCTCTGGTGCTTTTCATGAGTTTCATTTGGTAA 777 0.4376 MSETISGDPSSCSNQMTNQNASLSSTHNASNSNSERLDNATRFECNICIELAHDPVVTLCGHLYCWRCLYRCLHIRADSHECPVCKARIEKEKLVPLYGRGKPSSDPITSTTTSHMDNLPQRPTGLRPATSTPAAANPLARQGGVANLGEGTAGLGGSTAMHSVTAGFGNMTVPSSGFGGIFPAMFPLLFNLHVHGFNDATVYGTTSGFPHGFYYSFHGGLAPGFHQQHAREVGQSYSSIFAFGLIFLALVLFMSFIW* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00319 258 Pfam zinc-RING finger domain 44 86 IPR001841 -
Pte2g00319 258 ProSiteProfiles Zinc finger RING-type profile. 45 86 IPR001841 -
Pte2g00319 258 MobiDBLite consensus disorder prediction 98 121 - -
Pte2g00319 258 MobiDBLite consensus disorder prediction 1 33 - -
Pte2g00319 258 MobiDBLite consensus disorder prediction 104 121 - -
Pte2g00319 258 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Pte2g00319 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 100 IPR013083 -
Pte2g00319 258 SMART ring_2 45 85 IPR001841 -
Pte2g00319 258 SUPERFAMILY RING/U-box 34 95 - -
Pte2g00319 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00319 Pte-Chr2 2439924 2441205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00319 20 259 C3H Transcription Factor Family AT2G23780 41.667 8.79e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00319 K10666 - vvi:100245178 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00319 2 2439924 2441205 Pte12g00402 12 3339740 3341446 RCT
Pte2g00319 2 2439924 2441205 Pte2g00319 2 2439924 2441205 RCT
Pte1g02614 1 46467433 46471693 Pte2g00319 2 2439924 2441205 RCT
Pte12g00402 12 3339740 3341446 Pte2g00319 2 2439924 2441205 RCT