Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00297 ATGGCGTCTGCAGAGGTTGAATTTCGTTGCTTCGTCGGAGGGCTCGCTTGGGCCACCGACAGCGACGCTCTCTCAAGAGCTTTTTCTCCGCATGGCGAAGTTATCGACTCGAAGGTTATCAACGATCGTGAGACTGGAAGGTCAAGAGGTTTCGGATTTGTGACCTTCGCGAAAGAGGATGATATGAGAAACGCCATCGAAGCCATGAACGGCTTTAACCTCGATGGCCGTAACATTACCGTTAACGAGGCCCAATCTCGCGGAAGCGGCGGCGGAGGCGGAGGCGGCGGCGGATACAACCGTGGCGGTGGAGGATACGGTGGCGGATACGGGGGAGGCCGACGTGACGGTGGATATGGCAACCGTAACGGTGGAGGATATGGCGGTGGTCGTGGATACGGAGGTGGTGGTGGTGGGTACGGTGGAGGACGTGATCGTGGATATGGAGACGGTGGAAATCGTTACTCAAGAGGTGGCGGTGCCTCCGAAGATAATTGGAGGAACTAA 507 0.568 MASAEVEFRCFVGGLAWATDSDALSRAFSPHGEVIDSKVINDRETGRSRGFGFVTFAKEDDMRNAIEAMNGFNLDGRNITVNEAQSRGSGGGGGGGGGYNRGGGGYGGGYGGGRRDGGYGNRNGGGYGGGRGYGGGGGGYGGGRDRGYGDGGNRYSRGGGASEDNWRN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00297 168 Gene3D - 2 106 IPR012677 -
Pte2g00297 168 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Pte2g00297 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pte2g00297 168 MobiDBLite consensus disorder prediction 120 168 - -
Pte2g00297 168 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pte2g00297 168 CDD RRM2_NsCP33_like 9 84 - -
Pte2g00297 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pte2g00297 168 PANTHER GEO13361P1-RELATED 6 157 - -
Pte2g00297 168 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00297 Pte-Chr2 2316766 2317904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00297 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 4.74e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00297 - K13195 pavi:110770159 150.599