Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00289 ATGGCCATGATCGTGGTGGCACTTCCAGCTGAACGACAAGAGCTGTTGATCGGCTATGACTATGCCATGGAGGAAGAGACGTTTTCATGGGAGGATGCTGAGGAAGAAAGAGTAGGCACAAGGTGTGCAAGCTTAAACGACGAATATATTGAAGGAATATTTGACAAGATTAGTAAGGAAGATGGACAAGTTTTGTTGAAGAAGTGGCACTCTTGTGCTATCTGTCTGGAAGATTTCACGAGTTCAGACATGGAAATCAGACGCACTCCATGCTCTCATGTTTATCATCATGAGTGCATCATCGAGTGGCTGGGAAGAAACCGCATGTGTCCTTTGTGTCGATATCAGATAATATAG 357 0.4426 MAMIVVALPAERQELLIGYDYAMEEETFSWEDAEEERVGTRCASLNDEYIEGIFDKISKEDGQVLLKKWHSCAICLEDFTSSDMEIRRTPCSHVYHHECIIEWLGRNRMCPLCRYQII* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00289 118 Pfam Ring finger domain 71 114 IPR001841 -
Pte2g00289 118 SMART ring_2 72 113 IPR001841 -
Pte2g00289 118 SMART ringv_2 71 114 IPR011016 GO:0008270
Pte2g00289 118 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 115 - -
Pte2g00289 118 SUPERFAMILY RING/U-box 71 117 - -
Pte2g00289 118 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Pte2g00289 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00289 Pte-Chr2 2278022 2278378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00289 72 117 C3H Transcription Factor Family AT3G02340 50.000 6.44e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00289 - K11982 qsu:111998776 78.5666