Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00270 ATGAGACAAGGAAGGGAAGCAATTGAGGATTCACGATGTCGAGATTGTGGAAACCAAGCAAAGAAGGAGTGTGCTTACATGAGATGCAGAAGCTGCTGTAAGAGCAAAGGGTTTGAGTGTAAAACTCACGTTAAAAGTACTTGGGTTCCAGCGTATAGGAGGCGCCAAAGGGAACAGCATTCTTCTACTATTTCTCACCAAAGGCATAACCCTAAAAGGCACAGATCTTCAGATCAGAATATGGTTAAATTTCCAGATGAGATGAATGGCATGGCAAGTTTTCGTTGCGTTCGAGTGCAGTACTCCATGATTGATTTAGTTGATGAATACGCATATCACACCTCTGTGAAGATAGGCGGACATGTGTTTAAGGGCATCCTCTACGATCAAGGCCCTGAAAGCTGTCACACAGTTAGGAGGGCGGAGACTACTATAAGTGCTCATCAGCAGCATGATGATTTGATCAACATTAATTCCCTAGCAAGTCACGATGCAGGAACCAGCAATGCTTCAATTGCAGCAATTGCTTCTCATCACTCAGTTCCTCCACCATTGTATCCATTTTCTTTCAATGCTTTTGAATAG 585 0.4325 MRQGREAIEDSRCRDCGNQAKKECAYMRCRSCCKSKGFECKTHVKSTWVPAYRRRQREQHSSTISHQRHNPKRHRSSDQNMVKFPDEMNGMASFRCVRVQYSMIDLVDEYAYHTSVKIGGHVFKGILYDQGPESCHTVRRAETTISAHQQHDDLININSLASHDAGTSNASIAAIASHHSVPPPLYPFSFNAFE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00270 194 NCBIfam putative zinc finger domain, LRP1 type 13 54 IPR006510 -
Pte2g00270 194 Pfam Domain of unknown function (DUF702) 11 133 - -
Pte2g00270 194 MobiDBLite consensus disorder prediction 51 65 - -
Pte2g00270 194 NCBIfam LRP1 C-terminal domain 83 132 IPR006511 -
Pte2g00270 194 MobiDBLite consensus disorder prediction 51 79 - -
Pte2g00270 194 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 188 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00270 Pte-Chr2 2175657 2176656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00270 13 193 C2H2 Transcription Factor Family AT3G51060 40.741 7.50e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pte2g00270 DUF702 9.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00270 - - qsa:O6P43_011554 206.068