Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00265 ATGGAAGGCATGGTAGCTAGAGCGTTGAAATCAAGTTTACGCAGAGAACTAGCGGTCGTGAAGTCGACACAGCAAGCGTTTTACGAAGAACTCTTGTGTTTGAACGCTAATAATGGAGTTCCCGGTGAGGAATTCTCTGTGGACGACTTGCTTGACTTCACTAATGGTGAATTCCCGGTCGATAATGGACATAACGACGGACAAGATAATGAAGAAGAAGAAAAAGACAGTTCCTCTGCTTCTTTTTCTTCACAAGACCATGTGGAAGACGATAACAACTCTAATACCTCTGGGTTTTCCTGTACCAACGATTCTGAGTCCATCTTTGCTAGCGGACTTGCAGTTCCTACTGACGATATAGCCGAACTGGAATGGGTTTCTCACTTTGTCGACGATTCTGTACCAGAACTTCCACTCTTGTACCCAACAATAATTTCGGAGCAAACGAAAAACACCACTAGTGCTAGTTTCATAGGGAAGAGACGGCCTGAAGTACCGGTTGTTAGGCCAGGCTTAACCAGAGGACTCAATTTTTCGTCACCGGTTCCAGTCAAGCCGAGAAGCAAACGTCAAATTTCAAATGGTCCAAGGGTCTGGTTATCCAGGTCATCCTCACAAACGGACTCATCTCCGTGTTCTTCCGGGATTTCATCGTCTCCTTGTCTCATATGGAATCAAGTGAGCGAACCTCCGGTTAAGAAGCAGAGGAGAAAATCGGAAGGTCAAACCGACGGGTCAAACCCGGCCGGTGGGTCTACATTCCAGCGACGGTGTAGCCACTGCCAAGTGCAGAAGACCCCCCAATGGCGAGCCGGTCCACTGGGTGCTAAAACCCTATGTAACGCTTGTGGGGTACGTTACAAATCCGGTCGGCTGTTTCCGGAGTACCGACCGGCCTGTAGCCCAACGTTCTCAAGCGAAATTCACTCCAACAGTCACCGCAAGGTGTTAGAGATGAGGAAAAGGAAAGAGATGACCGGTCCGGAACCGGGTCTGGCGCAGGCGAACATGCAGAGGATGGTTCCGAGTTGCTGA 1035 0.4918 MEGMVARALKSSLRRELAVVKSTQQAFYEELLCLNANNGVPGEEFSVDDLLDFTNGEFPVDNGHNDGQDNEEEEKDSSSASFSSQDHVEDDNNSNTSGFSCTNDSESIFASGLAVPTDDIAELEWVSHFVDDSVPELPLLYPTIISEQTKNTTSASFIGKRRPEVPVVRPGLTRGLNFSSPVPVKPRSKRQISNGPRVWLSRSSSQTDSSPCSSGISSSPCLIWNQVSEPPVKKQRRKSEGQTDGSNPAGGSTFQRRCSHCQVQKTPQWRAGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSSEIHSNSHRKVLEMRKRKEMTGPEPGLAQANMQRMVPSC* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00265 344 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Pte2g00265 344 SMART GATA_3 252 306 IPR000679 GO:0006355|GO:0043565
Pte2g00265 344 MobiDBLite consensus disorder prediction 242 256 - -
Pte2g00265 344 MobiDBLite consensus disorder prediction 56 99 - -
Pte2g00265 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 315 - -
Pte2g00265 344 Gene3D - 251 302 IPR013088 GO:0006355|GO:0008270
Pte2g00265 344 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Pte2g00265 344 MobiDBLite consensus disorder prediction 81 99 - -
Pte2g00265 344 FunFam GATA transcription factor 249 334 - -
Pte2g00265 344 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Pte2g00265 344 CDD ZnF_GATA 257 314 IPR000679 GO:0006355|GO:0043565
Pte2g00265 344 PIRSF Txn_fac_GATA_plant 9 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte2g00265 344 MobiDBLite consensus disorder prediction 229 256 - -
Pte2g00265 344 MobiDBLite consensus disorder prediction 170 217 - -
Pte2g00265 344 MobiDBLite consensus disorder prediction 64 80 - -
Pte2g00265 344 PANTHER GATA TRANSCRIPTION FACTOR 34 333 - -
Pte2g00265 344 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00265 Pte-Chr2 2117996 2119608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00265 4 334 C2C2-Gata Transcription Factor Family AT5G66320 43.642 2.66e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte2g00265 GATA 4.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00265 - - qsa:O6P43_011543 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00265 2 2117996 2119608 Pte2g00265 2 2117996 2119608 RCT