Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00236 ATGGGGTTTGAGGAGGGAACTAGCAATGGGGACAATATAGATTTTGCCGAAGGAGTTAGGTGTCTGAAAAGTGAGACATTGAGTAACGGGATTGGAAATGTTCTTGAACAGGGTTCTGGTGAAACTGATGGTCTTCGTACCTACAAGAGGCGAAAGAATGTGAGGTTGAGTTCAGAGACCAAAGCTGAAGATGGTTGCAGAACGTATTTTGAGGCAGCCAGTAATCCTGTAGATCAGGTTGTAAACAAACCACGTGGCGTAGTTTTGGGCAATGCATCATGCCGGCGATTACACCATAATGTGGATGTTTCAAGTAATAGTTTGTCGAGGCACTGGAAAAATGTACAGAAGAAAACATATCCTTCAGTATATGACATTTTAATACAGAAGGATTCTTATCACAATCATAAAGATGCACATGAATGCTCTTCGCAGACAGGTTGGATCTCTGATGGATCTCAAAATCTGAGTAATGGACATGCAAGTCACAAGCGTGGCAGATCTCTGAAGGAGTCAAAGCTTCACAATATTACAGAAATGTGTCAACGTGCTTTCCGCAATATTTTAATCTCAGAGCAGTTCAGCCTATTGTCTAAACTACTCTATGAAAGCTTCCATGGAACTAAGGCTGACAGTGTAGTTGACTTTAGTCATATCACCTCAAAGATGAAAGAGGGAGCTTATGAGCAGTCACCAGCACTTTTCTTGTCAGATATTCAGCAGATATGGAGAATGCTTCAAGAGAGCGGAGCGAGAATTGTTTCTCTTGCTAAGAGCCTTTCAGACTTATCCAGAAGGTCCTATTGCGAACAGGTGGGAGATCCATTACATATTCCCCATGAAGAGGAAAGGCAAGAGTACTGTGCACAAGAATCTGACTCCCGCACAAAGACAGATCAAATAGAAGACTATAATCTATATAAAATTTGCAGTTGCAAATGTTGTGGAGGGAAGGCAAACGGGAAGGAGTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATGTCTCCTGTATTGAGCCTGTTGTGAAAGAAATTCCCCACCGAAGTTGGTACTGTGCCAATTGCACTGCTGATGGAATTGGCTCACCACATAAGAATTGCGTGGTGTGTGAACGTTTGAATGTTCCCAGGACCCTCAACCATGGAATTGATGACCAGAATCTCCCTGCAAATGAGGCAATGCATAATGAATTGGAAGAGAATTCCAATTCCTGTGCATACAGCAGACTAAAAGAATCCAGAGAGGTTAAGAACATGTTCGTTTGTAAAATTTGTGGAAATGAGGTGGGAGGTGAAGAGTTTAGGGTCTGTGGTCATGCTTTCTGCCCGAATAAATGTTACCATATAAGGTGCTTGACAAATCAACAACTGAAATTGTATGGACCCAAGTGGTACTGCCCTTCCTGTTTGTGCAGAGGTTGCCTCACAGATCGAGATGATGATAAGATTGTCCTGTGTGATGGCTGCGATCATGCATACCACAATTACTGCATGGATCCACCCCTGGCGTCAATTCCTAAAGGAAAGTGGTTCTGCAGAAAATGTTTTGCTGGGATTCAGGCTATACGTAAGGTAAAAAGGGCATACCAGAGTTTGGAAAATAAACAGAAAAATATGGTTCAGGAGGCAAGGATCTATAAAGTTGATAAGAAATGGAATTCTAAACGTGGACATGAATTGGAGAAAGGTGGAGGAATGGACATGCTTCTGAATGCGGCCAAAACACTTGAATTTTAA 1740 0.4207 MGFEEGTSNGDNIDFAEGVRCLKSETLSNGIGNVLEQGSGETDGLRTYKRRKNVRLSSETKAEDGCRTYFEAASNPVDQVVNKPRGVVLGNASCRRLHHNVDVSSNSLSRHWKNVQKKTYPSVYDILIQKDSYHNHKDAHECSSQTGWISDGSQNLSNGHASHKRGRSLKESKLHNITEMCQRAFRNILISEQFSLLSKLLYESFHGTKADSVVDFSHITSKMKEGAYEQSPALFLSDIQQIWRMLQESGARIVSLAKSLSDLSRRSYCEQVGDPLHIPHEEERQEYCAQESDSRTKTDQIEDYNLYKICSCKCCGGKANGKECLVCDSCEEMYHVSCIEPVVKEIPHRSWYCANCTADGIGSPHKNCVVCERLNVPRTLNHGIDDQNLPANEAMHNELEENSNSCAYSRLKESREVKNMFVCKICGNEVGGEEFRVCGHAFCPNKCYHIRCLTNQQLKLYGPKWYCPSCLCRGCLTDRDDDKIVLCDGCDHAYHNYCMDPPLASIPKGKWFCRKCFAGIQAIRKVKRAYQSLENKQKNMVQEARIYKVDKKWNSKRGHELEKGGGMDMLLNAAKTLEF* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00236 579 ProSiteProfiles Zinc finger PHD-type profile. 309 359 IPR019787 -
Pte2g00236 579 Coils Coil 523 543 - -
Pte2g00236 579 PANTHER OS02G0192300 PROTEIN 225 358 - -
Pte2g00236 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 475 IPR013083 -
Pte2g00236 579 ProSiteProfiles Zinc finger RING-type profile. 423 470 IPR001841 -
Pte2g00236 579 Gene3D - 241 360 - -
Pte2g00236 579 Pfam PHD-finger 312 358 IPR019787 -
Pte2g00236 579 Pfam PHD-finger 472 516 IPR019787 -
Pte2g00236 579 SUPERFAMILY FYVE/PHD zinc finger 472 521 IPR011011 -
Pte2g00236 579 FunFam PHD finger protein EHD3 isoform A 199 360 - -
Pte2g00236 579 ProSitePatterns Zinc finger PHD-type signature. 467 516 IPR019786 -
Pte2g00236 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 518 IPR013083 -
Pte2g00236 579 ProSiteProfiles Zinc finger PHD-type profile. 469 519 IPR019787 -
Pte2g00236 579 SUPERFAMILY FYVE/PHD zinc finger 306 358 IPR011011 -
Pte2g00236 579 SUPERFAMILY FYVE/PHD zinc finger 414 471 IPR011011 -
Pte2g00236 579 SMART PHD_3 474 517 IPR001965 -
Pte2g00236 579 SMART PHD_3 422 471 IPR001965 -
Pte2g00236 579 SMART PHD_3 311 357 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00236 Pte-Chr2 1937816 1945531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00236 463 542 C2H2 Transcription Factor Family AT3G01460 35.000 2.95e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte2g00236 PHD 2e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00236 - - qsa:O6P43_015116 651.744