Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00228 ATGCGTCAATTAAAGAGAAGAAGAGCGGCATCTAAAGGTGTCCATCACTTGGACGCGTTCTCCATGTGTCGATTGCTATTGCAAGAAGCCAATGAAGGTCTGTTTGGGAGTGTGGCTAGAGACATTGAGCGCGTTTGTGCTAAGAGCTTGCACTTGCTGAACGCTGACTTTGGAATGAGTCCTGAAATCCCAGTTGCTGAAACAAGTACATTGGCGCAACAAAAGAACTACCCCACAACCTTTGAGGATGTACATGATGATCAATTACCATTTCCAAATGTTATTGATTTGGAGGAAGACCATTCTTTGGATGATGCAAAGACAGCTGAGAAGTCAATTGTGATTCTTATTTCAGATGATGAAGGCAGTGAAGACAGAAACCACTGCCTCATTCGATACAATGTAGAGGAGGGATCTGTTGAGTCTCCGGAAAATAATGCAACGGTTGAAGATTGCACAGACAGCAATGGTGAACTCGAAAGGCAGGAACAAGATCAAGATAATATCAAGGGCATGGGTACACATTCAACTCCAACCAATGATATCATAATTGTGAGGAGCAATTCTCAGACATTCTCAGAAAAGCTGGGGAAAAATCAGAGTGAAGAGGCTGAAGATTGTGCAGAGAGCAAAGGTCAGCTCGAGAAAAGCGTGTTGCTGAAAATGGATCAAGGCAGCGTTAGAAAGGATAAAAGTGCATATTTTACTTCAGACAATGATATAATTGTGAAAAACAAGCGTGGAAAAGGAAAGGGTGATGAGGCCGAAGGTTGTGCAGAGAGCAATGGTCAACTTGAAAAGAGGTTGGAGCTGGAACTAGATCAAGATATTGTTGAGAAGGACAAGGATGAACATTTAAGTCCAGAAAATGGTATCATAATTGAACAAAGCAATTCTCATAGATTCTCAGAAAAGCTAGAAACCAATCAAAGTGACGAGGCTGAAGGTTCTGAAGAGAGCAATGGTCAATTTGAGAAGAGGCTGGAGCTGGAGCTGGAGCTAGATCAAGATAGTGTTGAAAAGGATAAGGGAGTACATTTAACTCCAGACAGTGATATAATAATTGTTGAAAGCAAATGTCAGACATTCTCAGAAAAGCTGGGAAAAGATCAAAGTGATAAGGCTGAAGTTGGTGCCGAGACAAATGGTCTGCTTGAGAAGAGGCTGGAGCTGGAACTAGATCAAGATAGTATTGAAAATGTTAAGGGTGCACAATTAACTCCAGAAATTGATATCTTAATTATGAAAAACAATTCTCAGTCATTCTCAGAAAAGCTAGAAAGCTGTCAAAGTGATAAGTTTGCAGGTTGTTCAAAGAGCAATGGTCAACGTGGCAGAAGGCTGGAGCTGGACCTAGAACAAGATGGTGTTAAAAAGGACAAGGGTGCACATATTACTAAGGAATTAAATTTGATAACTGTTCATGACAACTTCAAGACATCCTCAGAAGATTTAGGAACCAATCAAAGTGATACTAAAGCTTCTAATAGAACATACCAAGAAAACGAAAACCAAAGTGGTGACAATGGGTTTTTGGCTGCAAATGTCGATAAAAACACTTGTATGTATGACTATGTTGCTGCTAAAAATGATGAGGTTGAAGATGAACTAGCAGGTATCTGGAAGGAAATGGCATTTGCAATGGAATATAGCAAGGATGTCGTTGAAGATCCTCTTCACAGTGAGCAGAAGGAACAAAACGAGGAGGACTGTGACCATTCTTTTCTTCTGAAAGATGATATAGGCTATGTATGTCGCATCTGTGGAATCATTCAAAAGACAATAGAAGAGATCTTCGAATTCTCATTCACTAAGGTCAAGAGGAGCATAAGAACTTATCCGTCTGAATCTCGGCTAATGGGCAATCTGGCGTCAGATAGAAGCTTCACAGGTGAGATTAAATACTCAAAAGAGGACGTAGGGGAAAGTGAAGTTTTTGCTCATCCGAGGCACGGGAAGCTAATGAAACCTCATCAAGTGGAGGGCTTTAAATTTCTCTGCAGCAACCTCATGACAGATAAACCTGGTGGTTGCATTCTAGCTCATGCCCCAGGCTCTGGGAAGACATTCATGATCATAAGTTTTTTGCAGAGTTTCCTTGGACGATATCCTGAGGCAAGACCATTGGTTGTCCTGCCAAAAGGAATTTTAGGTACATGGAGAAAAGAATTTCAGACTTGGCAAGTGGAGGACTTTCCCTTGTATGATTTTTATACCTCAAAAGCAGATAATAGAACTCAACAATTGCATGTATTGGAAAAGTGGGTAAATCAGAAAAGCGTACTGTTTCTTGGATATCAACAGTTCTCCACCATTATCTATGATCATTCTGGAGATAATGTTGCTACACAGTGTCAAAAAATACTTTTGGCAGTCCCTAACATTCTTATTCTTGATGAAGGTCACACTCCAAGAAATGAAGACAGCAATGTACTTCAGTCACTTGCTAGAGTGCAAACACCTTTGAAAGTAGTACTTTCAGGCACCCTTTACCAGAACCATGTCAAAGAAGTGTTCAATGTACTAAATCTTGTTCGGCCAAAGTTCCTGAAATTGCAAACTTCTCGTGACGTTGTCAGACGCATAATGTCCAGAGTGGAGATATCTGGCAAAAAACATGTAAGATTTGGCCGTGACTCGGCTTTCTATGATTTGGTAGAACAAACACTCCAACTGAAAGATGAACATTGCTTGCGGAAAGCTGCTATCATAAAAGACCTTCGTGAAATGACCAGCAAGGTCCTCCACTATTATAAGGGTGATTTTCTTGACGAGCTTCCACGCCTTACTGATTTCACGATAGTACTCAATCTTAGTGCTAAACAGAAATGTGAAGTTGAAAACTTGTGGAAGTTGGACAAATTCAAGAGAAATTCTGTAGGAAGTCTGTTATATGTGCACCCAAAACTGAAATCTTTTTCAGAAAAATGCCAACACAATGGGGACAGGGGTTTTCTTATTGATGAGAGGCTAGATGATCTGTCAAGCAAGCTGAGACTGGCAGACGGAGTCAAAGCTAACTTTTTTCTCAATCTATTGAGCTTATGTGAATCAAGCGGTGAGAAGCTATTGGTATTCAGTCAGTACATTATCCCTTTAAAGCTTTTTGAGAGATTAGCAGTAAAAGTAAAGGGCTGGAGTAGGGACAAAGAGATGTTTGTAATAACAGGTGATACAAACACTGAACAAAGAGAGTGGTCAATGGAACAGTTCAACAGATCTGTTGATGCGAAAGTTTTTTTTGGTTCCATCAAAGCATGTGGGGAAGGAATTTCCTTGGTTGGAGCTTCACGCATTTTAATATTGGATGTTCATCTCAACCCTTCAGTGACACGCCAAGCAGTTGGCCGAGCCTTCCGACCAGGTCAGAAGAGAAAAGTATATGTTTACAGGTTAGTTGCTGCGGAGTCACCTGAAGAGGAAGATCATAACACTTGCTTTAGAAAGGAACTTATTTCGAAAATGTGGTTCGAATGGAATGAACATTGCTGGCACCAAGAATTTGAAATGCAAGCTGTTGATATAGAGGACTGCGGTGATCCTTTCCTGGAAAGTAAGTCCCTACGACAGGATATAAAAGTAATATATAAACGGTGA 3597 0.4053 MRQLKRRRAASKGVHHLDAFSMCRLLLQEANEGLFGSVARDIERVCAKSLHLLNADFGMSPEIPVAETSTLAQQKNYPTTFEDVHDDQLPFPNVIDLEEDHSLDDAKTAEKSIVILISDDEGSEDRNHCLIRYNVEEGSVESPENNATVEDCTDSNGELERQEQDQDNIKGMGTHSTPTNDIIIVRSNSQTFSEKLGKNQSEEAEDCAESKGQLEKSVLLKMDQGSVRKDKSAYFTSDNDIIVKNKRGKGKGDEAEGCAESNGQLEKRLELELDQDIVEKDKDEHLSPENGIIIEQSNSHRFSEKLETNQSDEAEGSEESNGQFEKRLELELELDQDSVEKDKGVHLTPDSDIIIVESKCQTFSEKLGKDQSDKAEVGAETNGLLEKRLELELDQDSIENVKGAQLTPEIDILIMKNNSQSFSEKLESCQSDKFAGCSKSNGQRGRRLELDLEQDGVKKDKGAHITKELNLITVHDNFKTSSEDLGTNQSDTKASNRTYQENENQSGDNGFLAANVDKNTCMYDYVAAKNDEVEDELAGIWKEMAFAMEYSKDVVEDPLHSEQKEQNEEDCDHSFLLKDDIGYVCRICGIIQKTIEEIFEFSFTKVKRSIRTYPSESRLMGNLASDRSFTGEIKYSKEDVGESEVFAHPRHGKLMKPHQVEGFKFLCSNLMTDKPGGCILAHAPGSGKTFMIISFLQSFLGRYPEARPLVVLPKGILGTWRKEFQTWQVEDFPLYDFYTSKADNRTQQLHVLEKWVNQKSVLFLGYQQFSTIIYDHSGDNVATQCQKILLAVPNILILDEGHTPRNEDSNVLQSLARVQTPLKVVLSGTLYQNHVKEVFNVLNLVRPKFLKLQTSRDVVRRIMSRVEISGKKHVRFGRDSAFYDLVEQTLQLKDEHCLRKAAIIKDLREMTSKVLHYYKGDFLDELPRLTDFTIVLNLSAKQKCEVENLWKLDKFKRNSVGSLLYVHPKLKSFSEKCQHNGDRGFLIDERLDDLSSKLRLADGVKANFFLNLLSLCESSGEKLLVFSQYIIPLKLFERLAVKVKGWSRDKEMFVITGDTNTEQREWSMEQFNRSVDAKVFFGSIKACGEGISLVGASRILILDVHLNPSVTRQAVGRAFRPGQKRKVYVYRLVAAESPEEEDHNTCFRKELISKMWFEWNEHCWHQEFEMQAVDIEDCGDPFLESKSLRQDIKVIYKR* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00228 1198 MobiDBLite consensus disorder prediction 154 168 - -
Pte2g00228 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 669 848 IPR014001 -
Pte2g00228 1198 SMART helicmild6 1037 1122 IPR001650 -
Pte2g00228 1198 SMART ultradead3 651 861 IPR014001 -
Pte2g00228 1198 Gene3D - 927 1185 IPR027417 -
Pte2g00228 1198 Gene3D - 624 881 IPR038718 -
Pte2g00228 1198 CDD SF2_C_SNF 994 1133 - -
Pte2g00228 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 856 IPR027417 -
Pte2g00228 1198 MobiDBLite consensus disorder prediction 480 510 - -
Pte2g00228 1198 Pfam Helicase conserved C-terminal domain 1007 1121 IPR001650 -
Pte2g00228 1198 MobiDBLite consensus disorder prediction 244 263 - -
Pte2g00228 1198 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 160 1197 IPR044567 GO:0080188
Pte2g00228 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 794 1161 IPR027417 -
Pte2g00228 1198 Pfam SNF2-related domain 674 942 IPR000330 GO:0005524|GO:0140658
Pte2g00228 1198 MobiDBLite consensus disorder prediction 280 324 - -
Pte2g00228 1198 MobiDBLite consensus disorder prediction 140 179 - -
Pte2g00228 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1008 1176 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00228 Pte-Chr2 1887207 1892277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00228 1019 1150 RAD5 or RAD16-like Gene Family AT5G43530 34.091 5.14e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte2g00228 SNF2_N 1.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00228 K10875 - qsu:112032212 1000.35