Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte2g00224 | ATGGCGCCAGTGTTGCAGACCTCTCAGCCTTGGGTTGAAAAATATCGGCCAAGGAAAGTGAAGGATGTGGCTCATCAAGAGGAAGTGGTTCGAGTCCTTACCAACACCCTCGAAACTTCAAGTTGTCCGCACATGCTATTCTATGGCCCACCCGGCACTGGAAAAACCACCACTGCACTCGCTATTGCACACCAGTTGTTCGGGCCTGAACTTTATAAGTCAAGGGTGTTGGAATTAAATGCAAGTGATGATCGCGGTATCAATGTTGTTCGCACAAAGATAAAAGATTTTGCTGCAGTAGCTGTAGGTACCAATCCACGTTCAGGGGGGTATCCTTGTCCACCTTATAAGATTATTATTCTAGACGAGGCAGACTCAATGACTGAAGACGCACAGAATGCTCTAAGGCGTACGATGGAGACTTACTCCAAAGTCACAAGATTCTTTTTTATATGCAATTATATTAGCAGGATCATAGAACCACTTGCTTCAAGGTGTGCAAAATTTAGGTTCAAGCCTTTGACTGAAGAAGTTATGCACAGCAGAATACAATTCATCTGCAAAGAAGAAGGTCTCAATCTTGACACTGAGGCTCTGAATGCGCTAAGTTCTATCTCCCAAGGAGATCTTCGTCGAGCTATCACATACTTGCAGTCAGCTGCCCGCTTATTTGGGTCATCAATCTCTTCGAAAGACTTGATCAATGTGTCTGGGGTCATTCCGAAAGAGGCTGTTCAGGGACTTCTTTATGCATGCAAAAGTGGTAACTTTGATTCGGCTAACAAGGAAGTCAATAATGTAATTGCAGAGGGATATCCAGTCACTCAGATGCTCTCACAGTTATTTGAGGTCATTGTTGTGGCTGATGACATATCGGATGAACAGAAAGCTCGAATATGCACAGCATTGGCCGAAGCAGATAAGATAAATATGCAGAGGCTTGTTGATGGCGCAGATGAGTACCTGCAGCTTCTTGATGTGGCCAGCATCACAACACGAGCTCTTGGCAACTTGCCTGAAGGATTTTCTTAG | 1032 | 0.4457 | MAPVLQTSQPWVEKYRPRKVKDVAHQEEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPRSGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEVMHSRIQFICKEEGLNLDTEALNALSSISQGDLRRAITYLQSAARLFGSSISSKDLINVSGVIPKEAVQGLLYACKSGNFDSANKEVNNVIAEGYPVTQMLSQLFEVIVVADDISDEQKARICTALAEADKINMQRLVDGADEYLQLLDVASITTRALGNLPEGFS* | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte2g00224 | 343 | FunFam | Replication factor C subunit 4 | 240 | 333 | - | - | |
| Pte2g00224 | 343 | FunFam | Replication factor C subunit 4 | 176 | 239 | - | - | |
| Pte2g00224 | 343 | SMART | AAA_5 | 41 | 174 | IPR003593 | GO:0016887 | |
| Pte2g00224 | 343 | CDD | HLD_clamp_RFC | 174 | 233 | - | - | |
| Pte2g00224 | 343 | Gene3D | - | 3 | 173 | IPR027417 | - | |
| Pte2g00224 | 343 | FunFam | Replication factor C subunit 5 | 3 | 174 | - | - | |
| Pte2g00224 | 343 | CDD | AAA | 26 | 166 | - | - | |
| Pte2g00224 | 343 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 9 | 325 | - | - | |
| Pte2g00224 | 343 | Pfam | Replication factor C C-terminal domain | 241 | 327 | IPR013748 | - | |
| Pte2g00224 | 343 | Pfam | ATPase family associated with various cellular activities (AAA) | 45 | 172 | IPR003959 | GO:0005524|GO:0016887 | |
| Pte2g00224 | 343 | Gene3D | - | 240 | 332 | - | - | |
| Pte2g00224 | 343 | Gene3D | - | 176 | 239 | - | - | |
| Pte2g00224 | 343 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 235 | IPR027417 | - | |
| Pte2g00224 | 343 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 241 | 329 | IPR008921 | GO:0003677|GO:0006260 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte2g00224 | Pte-Chr2 | 1853766 | 1858981 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte2g00224 | 1 | 342 | Core DNA Replication Machinery Family | AT1G21690 | 77.843 | 0.0 | 550 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte2g00224 | K10755 | - | egr:104450918 | 583.563 |