Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00203 ATGGCTGGCGAGACCCAGAGATGGACGGGTACGGTCAGATGGTTCAACGCGCGGAGAGGTTATGGATTCATAGCTCCAGATGATGGGAGCGAGGATCTCTTTGTGCATCACACGAGTATCAGTTCCGATGGATTTCGGACTTTGGCAGAGGGTCAGGCCGTCGAGTTTTTCCTGGATTACGGCGAGGATGGGCGGAGTAAGGCTGTTGATGTTCTAGTATTGGCTAGATCTCGAAGATACGGTGGCGGTCGTGGTGGTGGGAGAGGGTTTAACGGTGGAAGGGGCAGAGGAGTATCTGGCGGACGATTTGGTGGCGGTGGTGATGGCTATGCACTTCGTGGGAGAGGCGGAAGAGTTGGGCACAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGTTGGCTATGGTGGTTATGGATCTTATGGTGGCGGTGGAGGGGGAAGATACGGTGGCGGTGGAGGCGGAGGGGAAAGATACGGTGGTGGTGGCAGTGTTGCTGATGTTGAATGTTATAATTGTGGACGATTGGGTCATTTGGCGAGGGATTGCTATCAGAATGCTAGAGGCGGGGCGCGTAGACGCGGCGGAGGTGGCGGCCCTGGTTTAGGTGGAGGTGGCACGGGATGTTTTCATTGTGGAGAGGAAGGACATTTTGCGAGGGATTGCCCCAATGCTGAAAAATGA 681 0.5565 MAGETQRWTGTVRWFNARRGYGFIAPDDGSEDLFVHHTSISSDGFRTLAEGQAVEFFLDYGEDGRSKAVDVLVLARSRRYGGGRGGGRGFNGGRGRGVSGGRFGGGGDGYALRGRGGRVGHRGGGGGGGGGVGYGGYGSYGGGGGGRYGGGGGGGERYGGGGSVADVECYNCGRLGHLARDCYQNARGGARRRGGGGGPGLGGGGTGCFHCGEEGHFARDCPNAEK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00203 226 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Pte2g00203 226 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Pte2g00203 226 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Pte2g00203 226 ProSiteProfiles Zinc finger CCHC-type profile. 208 223 IPR001878 GO:0003676|GO:0008270
Pte2g00203 226 ProSiteProfiles Zinc finger CCHC-type profile. 169 182 IPR001878 GO:0003676|GO:0008270
Pte2g00203 226 SMART csp_8 9 74 IPR011129 GO:0003676
Pte2g00203 226 Pfam 'Cold-shock' DNA-binding domain 9 71 IPR002059 GO:0003676
Pte2g00203 226 SUPERFAMILY Nucleic acid-binding proteins 6 73 IPR012340 -
Pte2g00203 226 Gene3D - 1 71 IPR012340 -
Pte2g00203 226 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 224 - -
Pte2g00203 226 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Pte2g00203 226 Pfam Zinc knuckle 168 182 IPR001878 GO:0003676|GO:0008270
Pte2g00203 226 Pfam Zinc knuckle 207 223 IPR001878 GO:0003676|GO:0008270
Pte2g00203 226 SUPERFAMILY Retrovirus zinc finger-like domains 159 224 IPR036875 GO:0003676|GO:0008270
Pte2g00203 226 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Pte2g00203 226 SMART c2hcfinal6 168 184 IPR001878 GO:0003676|GO:0008270
Pte2g00203 226 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Pte2g00203 226 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Pte2g00203 226 Gene3D - 160 188 - -
Pte2g00203 226 Gene3D - 189 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00203 Pte-Chr2 1675806 1676486 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pte2g00203 CSD 8e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00203 - - qsa:O6P43_015217 121.324