Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00188 ATGAGCTCGCCACCAAATCAACTTGTCATCTCAAGTGAAATGGGCATCTATGAGCCCTTCCACCAAGTTTTCTTGTGGGGAGACACCTACAGAGCTGATGGAAGCCTAAATGGGGCTAACGCAAACTTTCCTGTCAATGTAGCGATGGACAACAACTCTGAACTTATTCCAATTGCGCCAAGTCGACTTTCTGGGAGTGATCAAGATGAAGACAGACCATCAGTTAGTAAGGTGCAAAGACGGCTAGCTCAAAATCGTGAAGCTGCTCGAAGGAGTCGCTTGCGGAAGAAGGCATATGTCAAACAATTAGAGACTAGCCGTCTGAAGCTTATTCAATTGGAGCTGGAACTACAGAAAAATAGGAAGCCGAGTATTTACGTCGGAGGCGCTAGAAGTGCAAGTCATACGGGTATATCTAGAACAGTGAAGGCAGGAATAGCTGCTTTCGAGATTAAGTATGAAAATTGGGTTGAGGAGCAAAATAGAAAGAACTGTGAGCTCAGAAATGCATTGCTAGCTCATATCCCTGATATGCAGCTTCATATACTTGTCAAGAGTTGCTTGAACCATTATCATAGTCTTTTCCAAATGAAAGCCGAAGTTGCAAAAGCAGATGTGTTCTATTTGATTTCTGGTGCATGGCGGACATCAGTAGAAAGCTTCTTTCTATGGATTGGTGGGCTACGACCATCAGAGCTTTTAAATGTTGTCTTGCCACAACTGGACCCGCCGTTAAGTGAACAGCAACTTGCTAGTGTTAAAAACCTCCAGCATTCATCTCAGCAAGCTGAAGACGCTCTCACCCAAGGACTAGACAAACTCCAGATCACTCTGGCACATAGCATAGCTTTTGATGCAATTCCTGCTGAAGACTATGGATCTCATACAGCTTCCTCCGCAGAGAAACTAGAAGCACTTGAAGGTTTTGTCAACCAGGCAGATCACCTGAGACAGCAGTCTCTGCAGCACATGTCCCGGATTCTGACAACCCACCAAGCTGCAAGAGGCCTGCTAGCTTTAGGAGAGTACTTTCACCGTCTCCGCGCCCTTAGTTCTCTTTGGGTTTCTCCTCCATGTGAAACCACTGCCGCTGCTACCTTATAA 1104 0.4565 MSSPPNQLVISSEMGIYEPFHQVFLWGDTYRADGSLNGANANFPVNVAMDNNSELIPIAPSRLSGSDQDEDRPSVSKVQRRLAQNREAARRSRLRKKAYVKQLETSRLKLIQLELELQKNRKPSIYVGGARSASHTGISRTVKAGIAAFEIKYENWVEEQNRKNCELRNALLAHIPDMQLHILVKSCLNHYHSLFQMKAEVAKADVFYLISGAWRTSVESFFLWIGGLRPSELLNVVLPQLDPPLSEQQLASVKNLQHSSQQAEDALTQGLDKLQITLAHSIAFDAIPAEDYGSHTASSAEKLEALEGFVNQADHLRQQSLQHMSRILTTHQAARGLLALGEYFHRLRALSSLWVSPPCETTAAATL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00188 367 MobiDBLite consensus disorder prediction 59 90 - -
Pte2g00188 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Pte2g00188 367 Gene3D - 76 123 - -
Pte2g00188 367 SMART brlzneu 68 136 IPR004827 GO:0003700|GO:0006355
Pte2g00188 367 SUPERFAMILY Leucine zipper domain 77 118 IPR046347 GO:0003700|GO:0006355
Pte2g00188 367 ProSiteProfiles DOG1 domain profile. 146 357 IPR025422 GO:0006351|GO:0043565
Pte2g00188 367 MobiDBLite consensus disorder prediction 65 89 - -
Pte2g00188 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700|GO:0006355
Pte2g00188 367 PANTHER TRANSCRIPTION FACTOR TGA9 11 359 - -
Pte2g00188 367 FunFam BZIP family transcription factor 76 125 - -
Pte2g00188 367 Pfam bZIP transcription factor 77 106 IPR004827 GO:0003700|GO:0006355
Pte2g00188 367 Pfam Seed dormancy control 165 238 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00188 Pte-Chr2 1560304 1564414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00188 2 362 Calmodulin-binding Proteins AT1G77920 56.383 1.08e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pte2g00188 DOG1 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00188 K14431 - qsa:O6P43_015254 444.121