Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00184 ATGGGTCGTGTGAAACTGGAGATCAAGAGAATAGAAAACAACACAAATAGACAAGTCACATTTTCCAAACGTAGAAATGGTCTCATTAAGAAAGCCTACGAGCTCTCCATCCTTTGTGACATTGATATTGCTCTTATCATGTTCTCTCCATCTGGTCGTCTCAGCCATTTTTCGGGAAGAAGAAGGATCGAGGATGTGTTCACTCGTTTTGTTAATCTTCCCGATAATGAAAGAGATGGGTATGCTGAATTAACTGAACTTGATAGAACAACTCTCAAATCAATCACAGCATTGTGCAATTTGCAGTACCTAATCAGGGCTCTTCAACAACTAAGGAGTGAAAACGATATAGCTCTTCAACTCGCCAATCCGGGAGATATTAACTCAGAGATTGAGGAACTGCAACAGGAAGTTAGTAGGTTACAGCAACAACTACAAATGGCAGAGGAACAGATAAGGGTTTTTGAACCAGAACCATTCAAGCTGACATCTGTGGCAGAACTTGAATCCAGCGAAAAGCACCTCGTAGATACCTTGACTCGTGTCATGCAGAGAAAGGAATATCTGCTGAGCAATCACCTGTCATCTTATGATCCTTCAGGGATTCAGGGAATATCATCCTCCTTTGAGAGTGAAGTGCATGACGCGGTGGGATCGGACATGCCAACGATGATGCCGCATCAGCAGGTGGAGATACCAATCAATGGCGGAGCAAACGTGCAACGCAGTAACAATGTTTCCACTTCGGATTACGAATGA 759 0.4321 MGRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVFTRFVNLPDNERDGYAELTELDRTTLKSITALCNLQYLIRALQQLRSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRVFEPEPFKLTSVAELESSEKHLVDTLTRVMQRKEYLLSNHLSSYDPSGIQGISSSFESEVHDAVGSDMPTMMPHQQVEIPINGGANVQRSNNVSTSDYE* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00184 252 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Pte2g00184 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte2g00184 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Pte2g00184 252 Coils Coil 131 151 - -
Pte2g00184 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte2g00184 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte2g00184 252 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte2g00184 252 FunFam MADS-box transcription factor 41 13 92 - -
Pte2g00184 252 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pte2g00184 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte2g00184 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte2g00184 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte2g00184 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00184 Pte-Chr2 1526712 1530292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00184 1 222 Type I MADS-box Gene Family AT1G22130 62.332 9.45e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte2g00184 SRF-TF 6.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00184 - - gmx:100305913 317.775