Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00175 ATGTCGCACTTTGGGAGATCTGGCCCTCCGGACATAAGAGACACCTATTCTCTTCTAGTCCTCAACATCTCTTTCCGAACCACCGCAGACGATCTTTACCCTCTTTTCGACAAGTACGGAAAGGTTGTCGATGTCTTCATCCCCAGAGACCGAAGGACCGGGGACTCAAGAGGCTTTGCCTTTGTTCGCTATAAGTATGCCGATGAGGCGCAAAAGGCTGTGGATAAGCTTGATGGGAGAGTAGTTGACGGCAGAGAAATAACCGTTCAATTTGCAAAATATGGTCCTAATGCTGAGAAAATTCATAAAGGCAGGATAATTGAGGCATCTTCAAAGATTAAAAGCAGATCAAGAAGCCGTAGCCCGCGCCCTAGGTACCGGGATGACTATAAGGACAGAGACTACAGGAGGAGGAGTCGTAGCAGAAGTAGGGAGAGATATGACCGTGACAAGCACCGTGGAAGGGAGAGGGACTATCGCAGCAGAAGTCGCAGTGTAAGCCCTGATCATAAAAAAGTCCGTAGGAGGCACAGATATGATGATGATAGACGTTCTCGAAGCAGATCCTATGAGAGTGCCTCCCCTGTAAGGCGCAGCGCCAGTCCCCGAAAAAGTCTAACCCCACCACCACCACCACGAAGAGCACATTCTCCTGATGAAAGGCGTGTTGAGGAAAATAATGATAATAATCATTCTCCCCCACGCAAGAATGTTTCATCTCGTGAACGGTCTGTGGATTCACGTAGTCCTACACCACGTAGATCAGATGCTGAGGAATGA 780 0.4859 MSHFGRSGPPDIRDTYSLLVLNISFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDKLDGRVVDGREITVQFAKYGPNAEKIHKGRIIEASSKIKSRSRSRSPRPRYRDDYKDRDYRRRSRSRSRERYDRDKHRGRERDYRSRSRSVSPDHKKVRRRHRYDDDRRSRSRSYESASPVRRSASPRKSLTPPPPPRRAHSPDERRVEENNDNNHSPPRKNVSSRERSVDSRSPTPRRSDAEE* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00175 259 MobiDBLite consensus disorder prediction 174 191 - -
Pte2g00175 259 MobiDBLite consensus disorder prediction 122 166 - -
Pte2g00175 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pte2g00175 259 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 249 - -
Pte2g00175 259 SMART rrm2_1 17 90 IPR003954 GO:0003676
Pte2g00175 259 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pte2g00175 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Pte2g00175 259 CDD RRM_SRSF2_SRSF8 18 90 - -
Pte2g00175 259 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pte2g00175 259 MobiDBLite consensus disorder prediction 214 259 - -
Pte2g00175 259 MobiDBLite consensus disorder prediction 103 259 - -
Pte2g00175 259 Gene3D - 4 106 IPR012677 -
Pte2g00175 259 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00175 Pte-Chr2 1453147 1456705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00175 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 39.241 1.94e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00175 K12891 - csin:114287374 285.419