Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00173 ATGGGAAGGTCCCCTTGTTGCGATGAGAATGGACTCAAGAAAGGACCCTGGACCCCTGAGGAGGATGAAAAGCTTGTCCAGTACATCAAGAAGCACGGCCATGGAAGTTGGAGAGCTCTTCCCAAGCTAGCTGGTCTCAATAGATGTGGCAAGAGCTGTAGGTTAAGGTGGACAAACTATCTCAGGCCAGATATCAAGAGAGGGAAACTTTCTCAAGAAGAAGAGCAAACAATTCTTCATCTGCATTCCATTCTTGGAAACAAATGGTCAGCAATTGCAAGCCATCTTCCTGGTCGAACTGACAATGAAATCAAGAATTTCTGGAACACTCATCTCAAGAAGAAGTTGATTCAGATGGGTTTTGATCCAATGACACACCAACCTAGAACTGACCTCTTCTCTGGATTGCCTTATTTGCTTGCCTTGGCAAACATGACAGACGTCATGGAGCATCACCAGTTATTACAAGCGGACATGGTTGAATTGACAAAGCTTCAATACCTCAACTCTCTTATACAATCCTCTACTTCTCGGAGTAACAACTCGTATGATCTGAATGGTACCACAATGGGAGACACTATTAATTTAGTGAACTCAATAATTTCCTCTCCTAGACTTAAAGAGAATATATGTAATATAAATTCCTTACAGCAACAACAGGAGAATAATAATATTCAGGCTCCATTTTCATTTGGAAATGAAGACTCCCAAGCTCAACCACTCCACCACCCAAACTTACTGTCTTATCATCTTTCAGACCCACAAGTCCCTTTCAGTCTCCGAACATGTGTGAACAGTCAGACATTAAACCAAGCCACTCACTTCACTTGTGTCAGTCGCGGAAATAGCCCATCTAATATTGAAATCTCGAATCGCAGCTGGTCAATAAACTCATCTCCTCCTCCTTCTGTTCCTTCTATTATGACTGCAAATTCCACAGGCAATCTGGGAGATGCTAGCAGCAGTACTTCCAGCTACGGTACTGGTTGGACAGCATCGTCCTATTGGCCTCAACTATTTCAAGACGACCCTATCATGCACGAGATTGCTTACTTTTCCCCTTCTGCTTTGATTATATGA 1080 0.4287 MGRSPCCDENGLKKGPWTPEEDEKLVQYIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKLSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLFSGLPYLLALANMTDVMEHHQLLQADMVELTKLQYLNSLIQSSTSRSNNSYDLNGTTMGDTINLVNSIISSPRLKENICNINSLQQQQENNNIQAPFSFGNEDSQAQPLHHPNLLSYHLSDPQVPFSLRTCVNSQTLNQATHFTCVSRGNSPSNIEISNRSWSINSSPPPSVPSIMTANSTGNLGDASSSTSSYGTGWTASSYWPQLFQDDPIMHEIAYFSPSALII* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00173 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte2g00173 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte2g00173 359 CDD SANT 16 61 IPR001005 -
Pte2g00173 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte2g00173 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte2g00173 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte2g00173 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte2g00173 359 Gene3D - 71 116 - -
Pte2g00173 359 Gene3D - 11 67 - -
Pte2g00173 359 FunFam MYB-related transcription factor 13 66 - -
Pte2g00173 359 FunFam Transcription factor MYB39 69 130 - -
Pte2g00173 359 CDD SANT 71 112 IPR001005 -
Pte2g00173 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte2g00173 359 SMART sant 66 114 IPR001005 -
Pte2g00173 359 SMART sant 13 63 IPR001005 -
Pte2g00173 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00173 Pte-Chr2 1421043 1422398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00173 1 350 MYB Transcription Factor Family AT1G34670 51.724 1.69e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte2g00173 Myb_DNA-binding 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00173 K09422 - qsu:112030452 430.254