Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00154 ATGTCGCTTTTTGGTTCTCTTTGCTCTACTTCAACTGCCGTATATCTCACTACTGAACATCCGAGCACTCGAACCTATTCATTTCAGAAACCAATCAGGATTTGTTCGAGTTTCACTGTTGCTCGAACTCCCAATTGGTTTCCAATTCAAGCTAACCCTTTTGAGAAAGTCCTTTCCATTGGAAACAAACAAAGTAGTGCTAGTAAGTCTGTTTTCCAGTGTGTTGTCGCCGCTACTCAAGAACAAGCTCTTGATCCTTTACAGTCTGATGTTTCTGCTGAGATTCAAGTGGTCGATACAGAGACTGAAGAATTCTCGCGGGACCGATTAATTGCCCAAAACATACCTTGGACAAGTACTCCTGAGGACATTCGTTGTTTGTTTGAGAAGCATGGAAGAGTCCTAGACGTTGAGCTTTCCATGTATAACAAGAGCAGGAACAGAGGTCTGGCGTTTGTTTCAATGGGTTCGCCCGAAGAAGCTCAAGTGGCTCTCAATAATCTCGATTCATCTGAATTTGAAGGTCGCGTATTGAAAATTGAATATGCACGAATTCGCAAGGAGAAAAGTCGCCCTTCAGTGTCCCCAAATATAGTGACGTACGCCTTATTTGTTGCAAATCTGGCATTTGAAGCAAGGGCTAAACATCTTAAAGAACTCTTTCAGTCAGAGTATAGTGGGGTTGTTTCCGCATCAGTTATATTTGAAGGCAACCCAAGGAAGTCAGTTGGGTATGGATTTGTATCCTTCAGTTCCAAGGAAGAAGCCGAGGACGCTCTTACTTCATTCCAGGGAAAGGAATTTATGGGAAGACCAATCAGAGTGTCACGTAGCAGACCATTTGTCAGACTGCCAGTGGAGGCCCAACCTGAAGAAAAATCATCTAATTTGGAATCCAGTGATTCAGAAGCATAA 915 0.4306 MSLFGSLCSTSTAVYLTTEHPSTRTYSFQKPIRICSSFTVARTPNWFPIQANPFEKVLSIGNKQSSASKSVFQCVVAATQEQALDPLQSDVSAEIQVVDTETEEFSRDRLIAQNIPWTSTPEDIRCLFEKHGRVLDVELSMYNKSRNRGLAFVSMGSPEEAQVALNNLDSSEFEGRVLKIEYARIRKEKSRPSVSPNIVTYALFVANLAFEARAKHLKELFQSEYSGVVSASVIFEGNPRKSVGYGFVSFSSKEEAEDALTSFQGKEFMGRPIRVSRSRPFVRLPVEAQPEEKSSNLESSDSEA* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00154 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 280 IPR000504 GO:0003723
Pte2g00154 304 SUPERFAMILY RNA-binding domain, RBD 85 191 IPR035979 GO:0003676
Pte2g00154 304 PANTHER OS02G0815200 PROTEIN 28 278 - -
Pte2g00154 304 Gene3D - 77 190 IPR012677 -
Pte2g00154 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Pte2g00154 304 SMART rrm1_1 109 181 IPR000504 GO:0003723
Pte2g00154 304 SMART rrm1_1 202 276 IPR000504 GO:0003723
Pte2g00154 304 Gene3D - 191 302 IPR012677 -
Pte2g00154 304 SUPERFAMILY RNA-binding domain, RBD 191 283 IPR035979 GO:0003676
Pte2g00154 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 274 IPR000504 GO:0003723
Pte2g00154 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 179 IPR000504 GO:0003723
Pte2g00154 304 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00154 Pte-Chr2 1284360 1286965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00154 110 297 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 4.65e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00154 - - qsa:O6P43_019606 296.975