Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00153 ATGGTGAGGAGACATCGAAAGCTTTTTCCAATCTCAACAAACCAAACCACGGACTGTTATAAATTTTGTGATCCAGCTTGTTCTTTCAACTGTTACTCTTATCCATACTACTACTACTACTACACCTCTCCACCCCCGCCTGAATCACATCCACCCCCTCTCTTCTCAGCTGTTGAGGATCCATCACACCAAAATAACCATGCATCTCTCTCCTTGATCATCTTGGCATCTTTGTTTGCAGGACTTTTTCTACTTGCTGCTTATTTTGTGATAAACAAGACCTGCAGTTTTTTGTGTTGCAATAACCAGGATCGTTCTCCTTCCGTACAAGATAACACCAATGAGGAGTTTCTAGATGAGAATCAAGTGGATCATCCGATTTGGTATATCACCACGGTTGGTTTGCAACAGTCAATTATCAATTCAATCACTATATGCAGGTACAAGAAAGGTGAGGGATTGGTTGAAGGTACAGAGTGTTCAGTGTGTTTAGGGGAATTTCAAGAGGATGAAACTTTAAGACTGTTACCAAAGTGCAGCCATGCTTTTCACATTAGTTGTATTGATACCTGGTTAAGGTCACATACGAATTGCCCTCTTTGTCGTGCCATTATTGTCTCCAACAATGGCAACAGCGAAATTTATATGCCCGCTTTGCCTTCAACTAATCAGATGAGTGATCATTCGAGTGGAGATGAGGAGACTCAGATAGAGGATTCTGGGAACCTTGGCAACAACTCAGTGGTGGTCATTACTGGAATCTCAGAAAACAGAACTGGAACGGGGAATGAAGAGGAACCCCAGGTGACTCATGGTGAAATGAAATTCAAGGAGCACGTTCATGATAATATAAATAACTCTGAAACTCGTCAAACAGACAATGGTGAAATAGAAGTGAATACTATCTCAAAGGATTCATCTTCAGGTCCAGCAGAATCTAGTTTTGCAGAACCGGAAAGAAATAAAATTATTCGCTCAGCGGTTGAACAAAATTTACACGTGGTGTGTGTTTCAGAACAAGATGGTGAGTGTTCAAGTTTGTTTACTAAAATGTCACATTCGACAATGGAAAAATATTTGCATATGCGCCCAGTTTCCATGAAAAGGTCGTCCTCATGTGGTGGAAGGATCGCATATCATGAGAGGTAA 1149 0.4099 MVRRHRKLFPISTNQTTDCYKFCDPACSFNCYSYPYYYYYYTSPPPPESHPPPLFSAVEDPSHQNNHASLSLIILASLFAGLFLLAAYFVINKTCSFLCCNNQDRSPSVQDNTNEEFLDENQVDHPIWYITTVGLQQSIINSITICRYKKGEGLVEGTECSVCLGEFQEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAIIVSNNGNSEIYMPALPSTNQMSDHSSGDEETQIEDSGNLGNNSVVVITGISENRTGTGNEEEPQVTHGEMKFKEHVHDNINNSETRQTDNGEIEVNTISKDSSSGPAESSFAEPERNKIIRSAVEQNLHVVCVSEQDGECSSLFTKMSHSTMEKYLHMRPVSMKRSSSCGGRIAYHER* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00153 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 211 IPR013083 -
Pte2g00153 382 MobiDBLite consensus disorder prediction 221 243 - -
Pte2g00153 382 Pfam Ring finger domain 159 202 IPR001841 -
Pte2g00153 382 CDD RING-H2_EL5-like 159 202 - -
Pte2g00153 382 PANTHER RING-H2 FINGER PROTEIN ATL16 56 297 IPR044600 GO:0016567|GO:0016740
Pte2g00153 382 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Pte2g00153 382 FunFam RING-H2 finger protein ATL54 135 208 - -
Pte2g00153 382 SMART ring_2 160 201 IPR001841 -
Pte2g00153 382 SUPERFAMILY RING/U-box 153 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00153 Pte-Chr2 1281854 1283360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00153 3 206 C3H Transcription Factor Family AT1G72220 52.232 3.22e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00153 - - aprc:113847030 316.235