Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00140 ATGGATTCACTCACCAGAACTCACTTGATCCGTGGCTTGATACAAGATGGCTCACCAGTTACGAGTCCAGGAAGAACAGTATATGCAGGTTCTCGTTTGCATAGTTCTGGTACCAGTTTTCCCATTATAGCCATTGCTGTCATTGGAATTATTGCAACAGCTTTCCTGCTTCTCAGTTACTACATCTTTGTAATCAAATGCTGCCTCAATTGGCACAGAATCGATTTTCTTAGACGTTTATCACTTTCAAGAAGACGTGAAGCGACGTGGGCGGTTTACACTCCTGCAACAGAGTCGAGAGGGCTTGAAGAAGCTGTGATTCGATTAATCCCAGTGATCCAATTCAAGAAAGAAGAAAACAGAGAAGAAGCGATGGAAAGAAGCTTTTGTGAATGTGCGGTTTGCTTGAATGAGTTTCAACAAGATGAAAAGCTAAGGATTATACCAAACTGTAGCCATGTCTTTCATATAGATTGCATTGATGTTTGGCTTCAAAACAATGCCAACTGCCCACTTTGCAGAACAAGCATATCCATGTCAACCCGGTTCGCAAACGATCACATTCTCACTCCAAGCCCTTCTCCTCAAGATCCAGCTCCACACAGTGGCCATCACACTGTAGGTGATGAAGATTATGTTGTCATTGAATTGGGTATATCCAATGGTGCAGATCAAACATTGCTTCAAGAACAGGAAAGGGCAAATTCAAGGGAGGTATCCATGCGTACCATAAGCCCTTCACCAAGGAAATTCGAACATAAACTTTTGCCGAAGTCAAGGAAGATGAATAAGATCACAAGCATGGGAGATGAATGTATTGACAGAAGAGGCAAAGATGATCCATTCTTAATTCAACCCATCAGGAGATCCATTTCAATGGATTCTTCAGGAGATAGAGAGCTTTCTTTGGCAGTACAAGAGGCTTTACAACAGCAGAACAGGCAAGTCATTGAGGTCAGTCCTAGTTCTAGTGAAGGTTGCAGCAGCAGAGTGAGAAGGTCGTTTTTCTCTTTTAGATCAAGAACTGCAGAATCAGAACATCTGAACGCATGA 1053 0.4245 MDSLTRTHLIRGLIQDGSPVTSPGRTVYAGSRLHSSGTSFPIIAIAVIGIIATAFLLLSYYIFVIKCCLNWHRIDFLRRLSLSRRREATWAVYTPATESRGLEEAVIRLIPVIQFKKEENREEAMERSFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISMSTRFANDHILTPSPSPQDPAPHSGHHTVGDEDYVVIELGISNGADQTLLQEQERANSREVSMRTISPSPRKFEHKLLPKSRKMNKITSMGDECIDRRGKDDPFLIQPIRRSISMDSSGDRELSLAVQEALQQQNRQVIEVSPSSSEGCSSRVRRSFFSFRSRTAESEHLNA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00140 350 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pte2g00140 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 179 IPR013083 -
Pte2g00140 350 FunFam E3 ubiquitin-protein ligase ATL6 91 180 - -
Pte2g00140 350 CDD RING-H2_EL5-like 131 174 - -
Pte2g00140 350 Pfam Ring finger domain 131 174 IPR001841 -
Pte2g00140 350 PANTHER RING-H2 FINGER PROTEIN ATL16 33 343 IPR044600 GO:0016567|GO:0016740
Pte2g00140 350 SUPERFAMILY RING/U-box 117 187 - -
Pte2g00140 350 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00140 Pte-Chr2 1148996 1150557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00140 32 316 C3H Transcription Factor Family AT1G04360 57.605 2.82e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00140 - - tcc:18603200 407.142