Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00128 ATGGCAGATCTTGTTAGCTATGGGAAACATGATCGTAACATTGAGCAAGCACTTATTGCTTTGAAAAAGGGTACGCAGTTAATTAAGTATAGCCGGCAAGGGAAACCTAAATTGCGCTTGTTCAGACTTTCACCAGATGAAACAACTTTGATTTGGTTATCTCATGGAAAAGAACGGAACTTGAACTTATCTTCTGTTTCTCGTATCATCCCTGGACAAAGAACTGCTGTGTTTAGAAGATATTTGTGCCCTGAGAAGGATTATTTATCATTTTCACTGATTTATAATAACGGTGAACGGTCACTTGATCTGATCTGCAAGGATAAAGCCGAGACAGAAGTTTGGTTGTCAGGTCTTAAGGCATTAACTTCTTCTAGACAGCGTGGTGGACATACTAAAAGTGACTTGTCTGATTTAACTGACAATGGTGAACTTGGTCGGAGTTCTTTTGGTTCATCACTAGATTATACTTCAAGTGTTAGCAGTGGTAGGATCTCTACTGATTCATTGGCTCGTGATAATTTATTTCTGGGAAGATCAGATGTTGGTTTAGAACGTGGAAATATGCAACCAAGAACTAGTACTGGAGATGGTTTCCGTGTTAGTGTCTCAAGCACTCCTAGCTGTTCAAGTGGAGGATATGGACCCGATGACATAGAATCGTTGGGAGATGTTTATATATGGGGAGAGCTATGGGCAGATGGTGGTGCTGTAGATGCATCTGGGAGCCCTATTCCAGTGAAAACTGACGTACTTGTCCCCAAGTCCTTGGAATCAAATGTTGTTCTAGATGTTCATCAGATTGCTTCAGGTGCACGACACATCGCTCTGGTCACAAGGCAAGGTGAAGTTTTTACATGGGGAGAAGAATCTGGAGGAAGGCTTGGTCTTGGGGTTGATAAAGACCGTAGTCACCCACAACTTGTCGATTTCCTAGCAGCCAGCAGCATAGATTTTGTTGCATGTGGTGAGCAACATACATGTGCTGTATCCACATCCGGGGATCTATTTACATGGGGTGATGGCAGCTATAATGCGGGGGTTATGGGTCATGGAATTGATGTTAGCCACTGGATACCTAAGAGGGTTACTGGTCCATTAGAAGGCCTTCAAGTAGTATCTGTTGCATGTGGTGCATGGCATTCGGCATTGGCAACATCCAGTGGAAAATTATTCACATTTGGAGATGGAACATTTGGTGTCTTGGGCCATGGGAACCGAGAGAGTGTATCATTTCCAAAGGAGGTAAAATCCTTGGTTGGACTAAAGACTATTAAAGTTGCATGTGGAGTATGGCATACAGCAGCCATTATGGAAGTAATGGGTCAACCTGGTGTAACTTCTCTTTCTAGAAAGCTCTTTACATGGGGTGATGGTGACAAATATCGTTTAGGTCACGGTGGTAAGGAAAGCTACCTGCTACCCACCCGTGTGTCTGCACTTATTGATTATAACTTTCACCAGTTAGCATGTGGGCACACCATGACTGTTGGCCTCACTACATCTGGTCATGTGTTTATAGTAGGATCAAATGAACACGGTCAGCTTGGTAATCCATCTGCTGATGGAAAAATACCTTGCTTGGTACAAGATAAGTTGGTCGGTGAATTCGTCGAAGAGATTTCCTGTGGAGCATACCACGTTGCTGCTTTGACATCAAGAAGTGAGGTGTATACTTGGGGACTAGGAACGAATGGACGATTAGGTCATGGAGACACAAAAAGTAGGAAATCTCCAACTTTGGTGGAAGCTTTGAAAGATAGGCAGGTGAAAAACATCTCATGTGGCTCAAACTTCACAGCATGTATATGCATCCATAAATGGGTATCAGGTGCTGATCAATCTCTTTGCACCGGATGTCGGCAAGCATTTGGCTTTACTAGAAAGAGGCATAACTGTTATAACTGTGGACTGGTGCATTGTCATGCCTGCAGCTCCAAGAAAGCTCTTAAAGCTGCATTAGCTCCGAATCCAGGAAAGCCGCATCGTGTTTGCGATGCTTGTTACGCAAAACTTAAAGCTTCTGAGTCTGGATTTAATGCTTCAGTTAGCAGGAAGAGTAGTGCACCTCGTAGCTCAATTGACGGGAGGGAGAGAATTGGCAGGCCAGAACTAAAATCATACAGACTTTTGTTACCTCCTGCAGCAGAACCTATAAGATTTCTTGACGTGAAATCTTGGGGACCTGAGCTGCCTGGAACAAGAGCTGAATCTCCTTCCTTTGCCAGAGGATCACAAGCTCCATTAGGACCGCCATTGAAAGATACTGGCGTTCCAAGTTCCTTGACTGCTGTTCAGGGTGCTCTCAAGCCATCTACTCCAACAGCTCAATCAGTCCCATCACCACCCAAATCAAGACATGCTTCTCCATATTCAAAGAGATCAAGCTCCCCGCGATCTTCCACTCCTGTACTCTCTAGAGGCCTCATGGACAATCTGAGAAAGACAAATGAGCTTTTGAATCTAGAAGTTTCAAAATTACAAAATCAAATGCGAAATTTGAAGCAGAAGTCCAATGTTCATGACTTGGAGATTCAGAAACTTCAGAAAAGAGCAAAGGAACTTACTTCGATGGCTGGAGAAGAATCATCTAGGTATAGATCAGCTGAAGAACTCATCAGATCCATGACAAAACAGTTGAAGGAAATATCTGAACAGATACCTCCTGAAGTTTCAAATTGTGAATCCTTAAAGGCCATGCAAGCTGAAGTAGAAGCTTTCCTGAATAACATGCTGGAATCTGAAATCTCTTCTTCCTTGACTTCTTCAGCAAATGCTTCTTGTATGCAGAACGATCGGAGAATGGACTATAACAAAGATTGTGCACATGAGCCATCAAATCCACAGAGCTCAGAAAATGTATCAAGGTCACCTGAATCTTCAAAAGTCAGGAAGGATGAAGAAAATCAAGTCGTGGAACAATTTGAACCTGGTGTTTATGTGACTCTTGCCGTTCTTCCAAACGGTAGCAAAGCATTCAAGCGAGTGAGATTCAGTAAACGATGGTTTGATGAACATCAAGCAGAAGAGTGGTGGAATAAAAATAAAGACAGGTTGCTTAAGAAATATAGCCCTTCACATACAGGAAGGGCTTCTACAGGATCATCAGGCTCAAAACCACAAGCTGAAGAAAATACTGGGTCTTCACATTCTTCCTAA 3159 0.4296 MADLVSYGKHDRNIEQALIALKKGTQLIKYSRQGKPKLRLFRLSPDETTLIWLSHGKERNLNLSSVSRIIPGQRTAVFRRYLCPEKDYLSFSLIYNNGERSLDLICKDKAETEVWLSGLKALTSSRQRGGHTKSDLSDLTDNGELGRSSFGSSLDYTSSVSSGRISTDSLARDNLFLGRSDVGLERGNMQPRTSTGDGFRVSVSSTPSCSSGGYGPDDIESLGDVYIWGELWADGGAVDASGSPIPVKTDVLVPKSLESNVVLDVHQIASGARHIALVTRQGEVFTWGEESGGRLGLGVDKDRSHPQLVDFLAASSIDFVACGEQHTCAVSTSGDLFTWGDGSYNAGVMGHGIDVSHWIPKRVTGPLEGLQVVSVACGAWHSALATSSGKLFTFGDGTFGVLGHGNRESVSFPKEVKSLVGLKTIKVACGVWHTAAIMEVMGQPGVTSLSRKLFTWGDGDKYRLGHGGKESYLLPTRVSALIDYNFHQLACGHTMTVGLTTSGHVFIVGSNEHGQLGNPSADGKIPCLVQDKLVGEFVEEISCGAYHVAALTSRSEVYTWGLGTNGRLGHGDTKSRKSPTLVEALKDRQVKNISCGSNFTACICIHKWVSGADQSLCTGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPNPGKPHRVCDACYAKLKASESGFNASVSRKSSAPRSSIDGRERIGRPELKSYRLLLPPAAEPIRFLDVKSWGPELPGTRAESPSFARGSQAPLGPPLKDTGVPSSLTAVQGALKPSTPTAQSVPSPPKSRHASPYSKRSSSPRSSTPVLSRGLMDNLRKTNELLNLEVSKLQNQMRNLKQKSNVHDLEIQKLQKRAKELTSMAGEESSRYRSAEELIRSMTKQLKEISEQIPPEVSNCESLKAMQAEVEAFLNNMLESEISSSLTSSANASCMQNDRRMDYNKDCAHEPSNPQSSENVSRSPESSKVRKDEENQVVEQFEPGVYVTLAVLPNGSKAFKRVRFSKRWFDEHQAEEWWNKNKDRLLKKYSPSHTGRASTGSSGSKPQAEENTGSSHSS* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00128 1052 MobiDBLite consensus disorder prediction 732 807 - -
Pte2g00128 1052 CDD FYVE_like_SF 617 669 - -
Pte2g00128 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 282 330 IPR000408 -
Pte2g00128 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 453 497 IPR000408 -
Pte2g00128 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 333 384 IPR000408 -
Pte2g00128 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 556 603 IPR000408 -
Pte2g00128 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Pte2g00128 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 388 437 IPR000408 -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 187 212 - -
Pte2g00128 1052 Pfam Transcription factor regulating root and shoot growth via Pin3 969 1023 IPR013591 -
Pte2g00128 1052 CDD PH_PLC_plant-like 12 122 - -
Pte2g00128 1052 Coils Coil 810 886 - -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 281 IPR000408 -
Pte2g00128 1052 Gene3D - 13 130 IPR011993 -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 440 IPR000408 -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 759 807 - -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 938 970 - -
Pte2g00128 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 685 IPR013083 -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 1022 1052 - -
Pte2g00128 1052 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 874 - -
Pte2g00128 1052 Gene3D - 345 445 IPR009091 -
Pte2g00128 1052 Gene3D - 209 344 IPR009091 -
Pte2g00128 1052 FunFam PH, RCC1 and FYVE domains-containing protein 1 194 442 - -
Pte2g00128 1052 ProSiteProfiles BRX domain profile. 969 1024 IPR013591 -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 333 IPR000408 -
Pte2g00128 1052 SUPERFAMILY RCC1/BLIP-II 222 608 IPR009091 -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 943 957 - -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 1026 1052 - -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Pte2g00128 1052 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 427 437 IPR000408 -
Pte2g00128 1052 Pfam Transcription factor BRX N-terminal domain 861 895 IPR027988 -
Pte2g00128 1052 SMART fyve_4 605 674 IPR000306 GO:0046872
Pte2g00128 1052 MobiDBLite consensus disorder prediction 680 700 - -
Pte2g00128 1052 MobiDBLite consensus disorder prediction 186 215 - -
Pte2g00128 1052 SUPERFAMILY PH domain-like 14 123 - -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 451 502 IPR000408 -
Pte2g00128 1052 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 268 278 IPR000408 -
Pte2g00128 1052 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 611 673 IPR017455 -
Pte2g00128 1052 Gene3D - 446 606 IPR009091 -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Pte2g00128 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 388 IPR000408 -
Pte2g00128 1052 SUPERFAMILY FYVE/PHD zinc finger 607 676 IPR011011 -
Pte2g00128 1052 Pfam FYVE zinc finger 607 673 IPR000306 GO:0046872
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 391 405 IPR000408 -
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 492 510 IPR000408 -
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 265 278 IPR000408 -
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 284 300 IPR000408 -
Pte2g00128 1052 PRINTS Chromosome condensation regulator RCC1 signature 550 571 IPR000408 -
Pte2g00128 1052 Pfam Pleckstrin homology domain 15 123 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00128 Pte-Chr2 1065886 1072780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00128 966 1024 Major Intrinsic Protein MIP AT1G31880 42.373 1.04e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00128 - - qsa:O6P43_021414 1433.7