Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00127 ATGGGACAAGAGCAATCCAAAAGCGAACTGCTGTATCAGCAAGTCAGTTATGGAAATTCGGAGGGGATCAAGAGCCTCCACAGACAAGGTGCTAGTCTGGAGTGGATTGACAAGGACGGAAAAACTCCTCTGATTCTGGCTTGTATGAACCCTGAGCTTCAAAATGTTGCAAAAACTTTAATAGAACTCGGTGCGAACATCAATGCTTACCGGGCTGGCCGTCATGCTGGCACTCCTTTGCACCATGCAGCAAAAAGAGGCCTTGAAAGTATTGTTAAGTTACTTCTTTCACATGGAGCAAATCCATTGCTTATGAACGATGTTTGTCAAACTCCTCTTGAAGTTGCTAGGGAAAAAGGGCATACAAACGTTGTTCGTGCAATTGAGAGCCATATTTGCTTGTTTTCTGGGTGGCTAAGGGAGTTCTATGGACCTGGATTTCTAGAATTACTAGCCCCTCGACTGCTATCCAGGAAAGTATGGGTGGTTGTTTTGCCATGTGGCTCTCGTAATCTTGCCCAACCTTATAAGTTGGAGCTTGCGATATATTCCACTTTGCAGGATGCCCAACCACGTACCGCAGTTGCACTTTGGAAAGCCAAACTAGAAGAGCAAAACTTAACCCATGCTGATCCTTCAGTGGTGATTGTTGAAAACTCCTCGAAGACAAGCATCAAACTTGCAGCTGAACATGAGAATGACAAGCGACAACTTAAATGGTTTTCGGATGCATGCAAAGGAATTGCTCAGGCAGTGCCGCCACCATTTCTGCAAAATAACCAAGCTTCAATGGTACCCTCAGCATCTGTGGCTGCAGAAGATGAACAATTGGCTATGGCTATAAATGCATCTCTTCAATCAGCTGTCCAGGAGCGACCATCCCTTGTTAATACCCAATCAAGCACTGCAGCAAGTTCATTTAACGGTTGGCTTGAACCAAATTCATCAAGTAGTACTACCGATGGTTGGTTGGAGACAGGTGAGCATCGTATGCCTCAAGCCCCAGTGGGACATGCTCATGAAAATACAAATGGTGCTTCTACCGGTGACTCTAGCTCAAGTGGGGATAGAACTAAGCATATGCAGGTCCACAACAGCAACATTTCTAGTGAAATCACCAGCAGTGCAACCACAATGCCATCTGCTCCACCAGTCCCAGATGAGGTTGTGGAGGGCCCAATTCATTATCCTTCAATAGATTATAGCCCTATTGATATTGCATGTACAAGTGTAGAGAACTTGCACAAAGTATCAGAACAAAAGGTTGCTGGCAGTGGCTCATCGTGTGTGATATGTCTGGATGCTCCAGCTGAAGGAGCCTGCATTCCGTGTGGTCATGTGGCCGGATGCATGTCATGTTTGAAAGAAGTAAAAGCCAAGAATTGGGGTTGCCCAGTTTGCCGTGCGAAGATTGACCAGATTTTAAAGATTTATCATGTTTAA 1443 0.4525 MGQEQSKSELLYQQVSYGNSEGIKSLHRQGASLEWIDKDGKTPLILACMNPELQNVAKTLIELGANINAYRAGRHAGTPLHHAAKRGLESIVKLLLSHGANPLLMNDVCQTPLEVAREKGHTNVVRAIESHICLFSGWLREFYGPGFLELLAPRLLSRKVWVVVLPCGSRNLAQPYKLELAIYSTLQDAQPRTAVALWKAKLEEQNLTHADPSVVIVENSSKTSIKLAAEHENDKRQLKWFSDACKGIAQAVPPPFLQNNQASMVPSASVAAEDEQLAMAINASLQSAVQERPSLVNTQSSTAASSFNGWLEPNSSSSTTDGWLETGEHRMPQAPVGHAHENTNGASTGDSSSSGDRTKHMQVHNSNISSEITSSATTMPSAPPVPDEVVEGPIHYPSIDYSPIDIACTSVENLHKVSEQKVAGSGSSCVICLDAPAEGACIPCGHVAGCMSCLKEVKAKNWGCPVCRAKIDQILKIYHV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00127 480 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Pte2g00127 480 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Pte2g00127 480 Gene3D - 2 135 IPR036770 -
Pte2g00127 480 MobiDBLite consensus disorder prediction 340 359 - -
Pte2g00127 480 MobiDBLite consensus disorder prediction 305 359 - -
Pte2g00127 480 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Pte2g00127 480 Pfam Ankyrin repeats (3 copies) 78 127 IPR002110 GO:0005515
Pte2g00127 480 Pfam Ankyrin repeat 39 69 IPR002110 GO:0005515
Pte2g00127 480 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Pte2g00127 480 MobiDBLite consensus disorder prediction 305 324 - -
Pte2g00127 480 SMART ANK_2a 39 69 IPR002110 GO:0005515
Pte2g00127 480 SMART ANK_2a 75 104 IPR002110 GO:0005515
Pte2g00127 480 Pfam Zinc finger, C3HC4 type (RING finger) 427 474 - -
Pte2g00127 480 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Pte2g00127 480 SUPERFAMILY RING/U-box 420 474 - -
Pte2g00127 480 CDD RING-HC_XBAT35-like 425 478 - -
Pte2g00127 480 PANTHER ROLLING PEBBLES, ISOFORM B 421 473 - -
Pte2g00127 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 479 IPR013083 -
Pte2g00127 480 ProSiteProfiles Zinc finger RING-type profile. 429 468 IPR001841 -
Pte2g00127 480 SMART ring_2 429 467 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00127 Pte-Chr2 1060529 1064821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00127 423 477 C3H Transcription Factor Family AT3G06140 40.000 5.35e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00127 - - qsa:O6P43_003204 610.142