Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00108 ATGGTTTCACTGAAGCTTCAGAAGCGGCTTGCCGCCAGTGTTCTCAAGTGCGGTAGAGGCAAAGTTTGGCTCGACCCTAATGAAGTCAATGAAATTTCCATGGCCAACTCCCGTCAAAACATTCGTAAGTTGGTTAAGGATGGTTTCATTATTAGAAAGCCTACTAAGATCCATTCTCGTTCTAGAGCTCGGCGAATGAAGGAGGCCAAGAGGAAGGGTCGTCATGCAGGATATGGTAAGCGCAAGGGTACAAGGGAAGCTAGGTTGCCCACTAAGATACTTTGGATGAGGAGGATGCGCGTCCTTAGGCGCCTGCTCCGCAAGTATAGAGAAGCAAAGAAGATTGACAAGCACATGTATCATGACATGTACATGAAGGTGAAGGGTAATGTTTTTAAGAACAAGAGGGTCTTGATGGAAAGTATTCACAAGTCAAAGGCGGAGAAACAGAGAGAGAAAACTTTATCTGACCAGTTTGAGGCTAAACGTGCTAAGAACAAAGCCAGCAGGGAAAGGAAATTTGCAAGAAGAGAGGAGCGTTTGGCTCAGGGCCCTATGGAGAAGGCACCAGCAGCTGCAGCTCCTGTATCATCTCAGCCTGCTCAAGGAACAAAGAAGTCGAAGAAGTGA 630 0.4683 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHAGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKQREKTLSDQFEAKRAKNKASRERKFARREERLAQGPMEKAPAAAAPVSSQPAQGTKKSKK* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00108 209 Gene3D - 57 190 - -
Pte2g00108 209 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pte2g00108 209 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Pte2g00108 209 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pte2g00108 209 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Pte2g00108 209 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Pte2g00108 209 MobiDBLite consensus disorder prediction 144 209 - -
Pte2g00108 209 FunFam Ribosomal protein L19 57 193 - -
Pte2g00108 209 MobiDBLite consensus disorder prediction 144 184 - -
Pte2g00108 209 MobiDBLite consensus disorder prediction 57 85 - -
Pte2g00108 209 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Pte2g00108 209 FunFam Ribosomal protein L19 1 56 - -
Pte2g00108 209 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pte2g00108 209 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Pte2g00108 209 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00108 Pte-Chr2 876041 878130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00108 1 210 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.810 2.31e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00108 K02885 - vvi:100267158 368.622