Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00085 ATGGCGCCGAAAACACCCAAGGTAAGCAGAAACCCTGATCTAATCCGAGGGGTTGGGAAGTATTCACGGTCGAAAATGTACCACAAGCGAGGTCTTTGGGCTATCAAGGCTAAGAATGGGGGTGTCTTCCCTCATCATGAAGCTAAGCCTAAGGCTGCTCCTCCTGCTCAGAAGCCACCAAAGTTCTACCCAGCTGACGATGTTAAGGTACCCCTCGTCAACAAACGCAAGCCCAAACCCACCAAGCTCAGGGCTAGCATTACCCCAGGTACTGTGCTTATCATTCTTGCAGGGAGGTTCATGGGGAAGAGAGTGGTTTTCCTGAAGCAGCTCCCATCTGGACTGCTTATGGTTACTGGGCCCTTCAAGATCAATGGTGTTCCTCTGAGGCGTGTAAATCAATCATATGTTATTGCCACTTCCACGAAAGTTGATATTTCTGGTGTGAATGTGGACAAGTTTGATGATAAGTACTTTGCGAAGGAAGCTCATCAGAAGAAGAAGAAGGGAGAAGGCGAATTTTTTGAAGCTGAGAAGGAGGAAAAAAATGTTCTCCCCCAGGAGAAAAAGGATGACCAGAAATCTGTTGATACTGCATTGTTAAAATCCATCGAAAGTGTTCCCGAGTTGAAGGCTTACTTGGGTGCTAGGTTTTCTCTTAAATCTGGCATGAAGCCTCACGAACTAGTTTTCTGA 696 0.4655 MAPKTPKVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPHHEAKPKAAPPAQKPPKFYPADDVKVPLVNKRKPKPTKLRASITPGTVLIILAGRFMGKRVVFLKQLPSGLLMVTGPFKINGVPLRRVNQSYVIATSTKVDISGVNVDKFDDKYFAKEAHQKKKKGEGEFFEAEKEEKNVLPQEKKDDQKSVDTALLKSIESVPELKAYLGARFSLKSGMKPHELVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00085 231 CDD KOW_RPL6 79 231 IPR041997 -
Pte2g00085 231 Pfam Ribosomal protein L6, N-terminal domain 4 59 IPR005568 GO:0003735|GO:0005840|GO:0006412
Pte2g00085 231 SUPERFAMILY Translation proteins SH3-like domain 85 171 IPR008991 -
Pte2g00085 231 PANTHER 60S RIBOSOMAL PROTEIN L6 1 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pte2g00085 231 Pfam Ribosomal protein L6e 124 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pte2g00085 231 Gene3D - 85 169 IPR014722 -
Pte2g00085 231 FunFam 60S ribosomal protein L6 85 169 - -
Pte2g00085 231 ProSitePatterns Ribosomal protein L6e signature. 125 143 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00085 Pte-Chr2 650391 653355 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00085 4 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 82.533 9.12e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00085 K02934 - pvy:116113922 389.808