Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00079 ATGGTTACTGGGCCCTTCAAGATCAATGGTGTTCCTCTGAGGCGTGTAAATCAATCATATGTTATCGCCACTTCCACGAAAGTTGATATTTCTGGTGTGAATGTGGACAAGTTTGATGATAAGTACTTTGCGAAGGAAGCTCATCAGAAGAAGAAGAAGGGAGAAGGCGAATTTTTTGAAGCTGAGAAGGAGGAAAAAAATGTTCTCCCCCAGGAGAAAAAGGATGACCAGAAATCTGTTGATACTGCATTGTTAAAATCCATCGAAAGTGTTCCCGAGTTGAAGGCTTACTTGGGTGCTAGGTTTTCTCTTAAATCTGGCATGAAGCCTCACGAACTAGTTTTCTGA 348 0.4167 MVTGPFKINGVPLRRVNQSYVIATSTKVDISGVNVDKFDDKYFAKEAHQKKKKGEGEFFEAEKEEKNVLPQEKKDDQKSVDTALLKSIESVPELKAYLGARFSLKSGMKPHELVF* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00079 115 CDD KOW_RPL6 1 115 IPR041997 -
Pte2g00079 115 MobiDBLite consensus disorder prediction 51 77 - -
Pte2g00079 115 Gene3D - 1 53 IPR014722 -
Pte2g00079 115 PANTHER 60S RIBOSOMAL PROTEIN L6 1 115 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pte2g00079 115 Pfam Ribosomal protein L6e 8 115 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pte2g00079 115 ProSitePatterns Ribosomal protein L6e signature. 9 27 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pte2g00079 115 SUPERFAMILY Translation proteins SH3-like domain 2 55 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00079 Pte-Chr2 617807 618777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00079 1 116 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.897 2.26e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00079 K02934 - gmx:100811720 194.126