Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00054 ATGGCAATGGCATTCCTTCCAAAACCATCACAACCCATACCGCAACAGCAACAATCGAACCATGAGGATGAAGATACAGACGTGGATGTTCATACAACTTCCGGTGCGCCCATTCGGTACTTGCCATTACACCATCTTTACTCCTCGACTTCACCTTGTAGTGGATCGACCAATGTGATGTCTAAGAAAGTCAAGGCGCGGAAACTCAACTCCCCTGCGACCAATAAATCTGACGACATGCACAACATCGACGTCACCGTGTGTGATTCCGGTGCCGCAAACTCTGGTGGTGATCGGAAGTCGTTTTTCTCTAAACCTTCGGTGTTATACGTATATTCTAGACGACAACGTACGAGGTCCCGGAATTCGTCCGGGATTGTCAAGACGCCGTCATTTTATGATAATCTGGTGGCAGTGAAGTCGGAGGAGGGTGTTGCTGATGTAAAGTCGGGAATTGGGGAGGAAGTTGAGGGTTTTGGGAGGGATTCCCTTTGCGTGGAGATGGGTGGGGAATCGAAAATGGATAAGTTGGTTATGCAGAATAAGAAGAGAAAATCTGGGAGTTGTGAGTTATTGAAATTGGGTGTTGATTTGAGCGTTTTGCGAAGTTTAGATGGGCCGAGGTTAAGGGATTGTAGAAATAATGGTGTTAACGGTAGTACTAAGGGTAACCTTGTTAAGAAGCAGAAGAAGTTGAGCTCTGTGGAACATAATGAGAAGCTGCTGGCTGCCACACCCGGTGTAAAGAGATGGGTCAGGTTGAGTTTCGACGGCGTTGATTCAAAAACATTCATTGGGTTAAAATGCAAGGTTTATTGGCCCATGGATGCTGAATGGTACGCGGGACGTGTTATACGTTATGATTCTGATACCAATCGGCATAAGGTTTTGTATGAAGACGGCGATCAAGAAGAATTGGTCCTTTCGAATGAGAAAATCAAATTTTACATTTCGCACCAGGAGATGCAGCATTTGCACTTGACTGTTGGTGCAAAAAAACAGGACAATGATGCCTCTGATTATAGTGAAATGTTTTTCTTGGCAGCAGTTTCAGATGATATCCCAAACTATGAGCCCGGGGAAATAATTTGGGCCAAGCTGACAGGTCATACAGAGTGGCCGGCAGTTGTTGTGGAAGAATCAGTCATTGAAAGTAAAGGTGTTAAAAATAGTTCTGGAGGAAGGTTAATCCCAGTGCAATTTTTTGGCACATATGACTTTGCAAGGATTAAAGTGGACCAAGTTGTATCATTTCTTAAAGGGCTTCTATGTTCTTTTCACTTGAAAAGCAGAAAACCCCGATTCATTCAGGGTCTCGAAGAAGCAAAAATGTATTTGAGTGCACAGCGGCTTCCTGAAAGAATGCTACATCTACAGAAAGAAATTCATAATGAAAATGTGAGTAGAGAGGATGAAGAGAGTACAGATTCAGGTGAGGATGGCATAGAGGAAGGGACTCAGATGAAGTTGGGAAAGGGTTTACCTAGTTCAAAAGTTTCTTCAAAATACACTCTTTGCAAGTCCCGAAGATATGGTGACACCCCCTTCGGTTACAGACCTGTTCGTGTTGATTGGAAGGACCTTGATAAGTGCAGTGTTTGTCACATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAGTGCAGAATGATGGTCCATGCAAGGTGTTATGGAGAATTAGAGCCTGTCAATGGTGTATTATGGCTATGCAACCTATGTCGCCCTGGTGCTCCTGAGTCTCCTCCACGTTGCTGCCTTTGTCCTGTTTTAGGAGGGGCAATGAAGCCAACCACTGACGGTAGATGGGCTCATCTGGCATGTGCTATGTGGATACCTGAAACTTGCTTGTCTGATGTCAAGAGAATGGAACCCATTGATGGGTTAAACAGAATCAATAAGGATCGTTGGAAGTTATTATGTAGCATATGTGGTGTATCTTATGGAGCCTGCATCCAATGTTCAAACAATACCTGTTGTGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTTTGTGTAGAGCTTGAGGATGAAGACAGGCTTTATCTTCTTTCTGTGGATGATGACGAAGATCAGTGTATTCGTCTTCTTTCTTTCTGCAAGAAGCACAGACCACCATCCAGCGATCGCGGTGCTCTTACTAAACGTGTTGGGCAACTTGTTAGTCAATGTTCAGATTACAACCCACCTTGTAATCCTTCTGGCTGTGCTCGTACTGAGCCATATAACTATTCGTGTCGGAGAGGTAGGAAAGAACCCGAGGCTCTTGCTGCTGCATCATTGAAGCGCTTGTTCGTTGAGAACCAGCCTTATGTAGTTGGTGGTTATTGCCAACATGAGTCTTTGAAAAGCTCACTGCCTGGTGTTGTCGGCTCTAAGTTCTCTTCATGCGTGCAGTCGCGAACTTCTCAGCTTGATTTTCCTGAAAGTATACTTTCTATTGTTGAGAAGTATCAGTACATGAGGGAAACCTTCCGGAAGAGACTAGCCTTTGGAAAGTCAAGAATTCATGGATTTGGAATCTTTGCAAAGCTTCCACACAGAGCTGGGGACATGATGATTGAATACTCTGGAGAACTTGTTAGACCGCCAGTGGCTGACAGGAGAGAGCGATTCATATACAATTTACTAGTGGGTGCTGGGACTTATATGTTCCGGATAGATGATGAGCGGGTCATTGATGCCACGAGAGCAGGAAGCATTGCTCATTTGATCAATCATTCCTGTGAGCCAAACTGCTATTCAAGAGTTATAAGTGTTAACGGTGACGAGCATATAGTAATATTTGCAAAACGAGACATAAGGCAATGGGAAGAATTAACATATGATTATAGATTCTTTTCAATTGATGAACAATTGGCTTGTTATTGTGGCTTTCCAAGATGCCGTGGAATTGTTAATGACACTGAGGCAGAAGAACGGGCTGCAAAACTCTATGCTCCTAGGAGTGAATTGATTGACTGGAAAGGGGAATGA 2988 0.4404 MAMAFLPKPSQPIPQQQQSNHEDEDTDVDVHTTSGAPIRYLPLHHLYSSTSPCSGSTNVMSKKVKARKLNSPATNKSDDMHNIDVTVCDSGAANSGGDRKSFFSKPSVLYVYSRRQRTRSRNSSGIVKTPSFYDNLVAVKSEEGVADVKSGIGEEVEGFGRDSLCVEMGGESKMDKLVMQNKKRKSGSCELLKLGVDLSVLRSLDGPRLRDCRNNGVNGSTKGNLVKKQKKLSSVEHNEKLLAATPGVKRWVRLSFDGVDSKTFIGLKCKVYWPMDAEWYAGRVIRYDSDTNRHKVLYEDGDQEELVLSNEKIKFYISHQEMQHLHLTVGAKKQDNDASDYSEMFFLAAVSDDIPNYEPGEIIWAKLTGHTEWPAVVVEESVIESKGVKNSSGGRLIPVQFFGTYDFARIKVDQVVSFLKGLLCSFHLKSRKPRFIQGLEEAKMYLSAQRLPERMLHLQKEIHNENVSREDEESTDSGEDGIEEGTQMKLGKGLPSSKVSSKYTLCKSRRYGDTPFGYRPVRVDWKDLDKCSVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPESPPRCCLCPVLGGAMKPTTDGRWAHLACAMWIPETCLSDVKRMEPIDGLNRINKDRWKLLCSICGVSYGACIQCSNNTCCVAYHPLCARAAGLCVELEDEDRLYLLSVDDDEDQCIRLLSFCKKHRPPSSDRGALTKRVGQLVSQCSDYNPPCNPSGCARTEPYNYSCRRGRKEPEALAAASLKRLFVENQPYVVGGYCQHESLKSSLPGVVGSKFSSCVQSRTSQLDFPESILSIVEKYQYMRETFRKRLAFGKSRIHGFGIFAKLPHRAGDMMIEYSGELVRPPVADRRERFIYNLLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIVIFAKRDIRQWEELTYDYRFFSIDEQLACYCGFPRCRGIVNDTEAEERAAKLYAPRSELIDWKGE* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00054 995 Pfam PHD-finger 543 577 - -
Pte2g00054 995 SUPERFAMILY FYVE/PHD zinc finger 522 595 IPR011011 -
Pte2g00054 995 CDD PWWP_AtATX1-like 358 452 - -
Pte2g00054 995 SUPERFAMILY SET domain 821 971 IPR046341 -
Pte2g00054 995 ProSiteProfiles Extended PHD (ePHD) domain profile. 584 708 IPR034732 -
Pte2g00054 995 SUPERFAMILY Tudor/PWWP/MBT 263 307 - -
Pte2g00054 995 Pfam PWWP domain 360 446 IPR000313 -
Pte2g00054 995 SUPERFAMILY Tudor/PWWP/MBT 356 474 - -
Pte2g00054 995 SMART PHD_3 642 708 IPR001965 -
Pte2g00054 995 SMART PHD_3 530 577 IPR001965 -
Pte2g00054 995 Gene3D SET domain 724 985 IPR046341 -
Pte2g00054 995 FunFam Histone-lysine N-methyltransferase 767 988 - -
Pte2g00054 995 SMART PWWP_4 357 419 IPR000313 -
Pte2g00054 995 ProSiteProfiles PWWP domain profile. 359 421 IPR000313 -
Pte2g00054 995 Gene3D - 349 454 - -
Pte2g00054 995 CDD PHD_ATX1_2_like 530 576 IPR042010 -
Pte2g00054 995 MobiDBLite consensus disorder prediction 465 495 - -
Pte2g00054 995 MobiDBLite consensus disorder prediction 1 32 - -
Pte2g00054 995 FunFam Histone-lysine N-methyltransferase 518 580 - -
Pte2g00054 995 SMART TUDOR_7 261 319 IPR002999 -
Pte2g00054 995 Pfam SET domain 842 948 IPR001214 GO:0005515
Pte2g00054 995 ProSiteProfiles Post-SET domain profile. 955 971 IPR003616 -
Pte2g00054 995 CDD SET_SETD1-like 820 967 - -
Pte2g00054 995 SMART set_7 831 955 IPR001214 GO:0005515
Pte2g00054 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 580 IPR013083 -
Pte2g00054 995 CDD Tudor_Agenet_AtEML-like 265 315 - -
Pte2g00054 995 ProSiteProfiles SET domain profile. 831 949 IPR001214 GO:0005515
Pte2g00054 995 PANTHER PHD FINGER PROTEINS 35 986 - -
Pte2g00054 995 CDD ePHD_ATX1_2_like 587 707 IPR041956 -
Pte2g00054 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 709 IPR013083 -
Pte2g00054 995 ProSiteProfiles Zinc finger PHD-type profile. 528 579 IPR019787 -
Pte2g00054 995 Pfam PHD-zinc-finger like domain 586 707 - -
Pte2g00054 995 Gene3D - 260 315 - -
Pte2g00054 995 ProSitePatterns Zinc finger PHD-type signature. 531 576 IPR019786 -
Pte2g00054 995 FunFam Histone-lysine N-methyltransferase 582 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00054 Pte-Chr2 438031 450396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00054 531 678 C2H2 Transcription Factor Family AT3G14740 39.735 4.44e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte2g00054 zf-HC5HC2H_2 1.4e-32 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00054 - - rvl:131301515 1135.55