Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00046 ATGATCACGTCGTTTTGTGATGCAGACAGTAGTAGCCCAAAAGTGAGTCTTATATCTCTAATGGCATTTTGCAATAGACTTGGCAGCCTCTTGAAGCAGGGTGCTGCTCAGAACATGCAAGCACCTACAGCAGCTATCTTTAACTCTATACGCTGCATGTCTACAAGTACTACCAAACTTTTTATTGGAGGCCTTTCATGGGGAGTTGATGATAGTTCTCTGAGAGATGCTTTTTCTGGCTTTGGAGATGTCGTTGAAGCAAGGGTTATACTCAATCGGGACACTGGAAAGTCCAAGGGATTTGGGTTTGTCAACTTCTCCAGTGGTGATTCTGCTAGCGCGGCAGTAGCTGCAATGGATGGCCAGGAACTAGATGGGCGCAACATCCGAGTGACTTATGCAAATGACAGACCTCCTCCTCCTCGGGGTTATGGGGGTGGTGGTGGTGGTTTCCGTGGGGATGGAGATTTTGGGAATCCTAGCTTCTAG 489 0.4765 MITSFCDADSSSPKVSLISLMAFCNRLGSLLKQGAAQNMQAPTAAIFNSIRCMSTSTTKLFIGGLSWGVDDSSLRDAFSGFGDVVEARVILNRDTGKSKGFGFVNFSSGDSASAAVAAMDGQELDGRNIRVTYANDRPPPPRGYGGGGGGFRGDGDFGNPSF* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00046 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Pte2g00046 162 MobiDBLite consensus disorder prediction 132 162 - -
Pte2g00046 162 Gene3D - 36 161 IPR012677 -
Pte2g00046 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 130 IPR000504 GO:0003723
Pte2g00046 162 SUPERFAMILY RNA-binding domain, RBD 54 157 IPR035979 GO:0003676
Pte2g00046 162 SMART rrm1_1 59 132 IPR000504 GO:0003723
Pte2g00046 162 PANTHER GEO13361P1-RELATED 48 148 - -
Pte2g00046 162 CDD RRM2_NsCP33_like 59 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00046 Pte-Chr2 370101 372396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00046 57 138 Eukaryotic Initiation Factors Gene Family AT1G49760 40.244 1.15e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00046 - - tcc:18602650 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00046 2 370101 372396 Pte2g00046 2 370101 372396 RCT