Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00041 ATGGACGATGTTCATGGATCCGGCGGTGGAGTCAGCGGAGGTCCGGCACCATTCCTTCTGAAAACGTACGAGATGGTCGACGACTCTTCTACTGACAACATCGTCTCTTGGAGCTCCAGCAATAACAGCTTTGTGGTCTGGAACCCGCCCGAGTTTTCAAGCCGTCTTCTACCCACCTACTTTAAGCACAATAACTTCTCCAGCTTCATCAGACAGCTCAACACCTACGGATTTAGGAAAGTAGACCCAGAAAGATGGGAGTTTGCCAACGAAGATTTTGTGAAAGATCAAAAGCACCTCCTCAAGAACATTCACCGTAGGAAACCAATCCATAGTCACAGTCAACCTCCAGGTTCTCTTGTGGATGCTGAAAGGGCTGCACTTGATGAAGAAATAGATCGGCTTTCCCGTGAAAAAGCTGGACATGAATCCAAATTATTAAAGTTAAAGCAGGAGAGATCTACTGCAAATCTTCAATTAGAAGACTTGACTAACAGAATTGATGGTTTGGAGAAAAGGCAGGAGAATTTGCTCAACTTTTTCGACAAGGCTCTTCAGAATCCTACTTTTGTTGAACATCTTCTGCGGAAAATTGAGTCAATGGATTTGTCAGCATATAACAAAAAACGGCGATTGCCTGATGTTGGCCATTCACACCCAGTTTCTGAGAATAATGTTACTGACAGTGGCAGCAATAGTAGACCTGAATTTGGAAATATTTTCCACCAGGATTTCTCAAATAAACTCAGACTTGAATTGTCACCAGCTGTTTCTGATATTAACTTAGTGTCACAGAGCTCCACTGAAGATGAGGCAAGTCCACCTAGAAGCATATCTGGAGAACCAAAAGTAATGCAAACTCGACCGGAGACACTTGTACTTTCAGCTGAAATGTTAGAGCCTTCAGATGCTGGGACATCTTTTACATTTCAAAGGGATTCATCTCTGTCACGAAGACCAATTAATGATAGCACAAGACTACATCCTCTGCAGTCGAGTTTAACCTCTAGCGATGAAGGTGATGGCCATCTATCCTGCCATTTGAATCTGACCCTGGCATCCTCGTCTTTGCATGTAGACAAAAATCCTCACTTAAGAAAGTCATCCCAGATAGGTACTCCTAGTATTGGTAAATCCTCAGATTCAATGTTTCATGGCAATGGGTTACAAACTGATAATGGAGCTTCTTCAAGTCAAAACCCAATCAATGAGGTAGCGAACTTATCTTCATCGAAAGAGGTTCAAAGTAACCCGGAAGCCCAAGCTCCAGCTAGAGTGAATGACGTGTTCTGGGAACAGTTCCTTACAGAGAGACCTGGATGTTCTGATAATGAAGAAGCGATTTCAAACTATAGGTCAAATGTATGTGACGACCAAGAAGATAGAAGATCAGGTCATTTGATTTCTAGAGATATAAAGAACGTGAATCAGCTGACACTTTGA 1443 0.4262 MDDVHGSGGGVSGGPAPFLLKTYEMVDDSSTDNIVSWSSSNNSFVVWNPPEFSSRLLPTYFKHNNFSSFIRQLNTYGFRKVDPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSQPPGSLVDAERAALDEEIDRLSREKAGHESKLLKLKQERSTANLQLEDLTNRIDGLEKRQENLLNFFDKALQNPTFVEHLLRKIESMDLSAYNKKRRLPDVGHSHPVSENNVTDSGSNSRPEFGNIFHQDFSNKLRLELSPAVSDINLVSQSSTEDEASPPRSISGEPKVMQTRPETLVLSAEMLEPSDAGTSFTFQRDSSLSRRPINDSTRLHPLQSSLTSSDEGDGHLSCHLNLTLASSSLHVDKNPHLRKSSQIGTPSIGKSSDSMFHGNGLQTDNGASSSQNPINEVANLSSSKEVQSNPEAQAPARVNDVFWEQFLTERPGCSDNEEAISNYRSNVCDDQEDRRSGHLISRDIKNVNQLTL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00041 480 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte2g00041 480 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte2g00041 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 302 IPR027725 -
Pte2g00041 480 Coils Coil 125 180 - -
Pte2g00041 480 MobiDBLite consensus disorder prediction 361 402 - -
Pte2g00041 480 SUPERFAMILY "Winged helix" DNA-binding domain 14 107 IPR036390 -
Pte2g00041 480 MobiDBLite consensus disorder prediction 304 342 - -
Pte2g00041 480 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte2g00041 480 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte2g00041 480 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte2g00041 480 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte2g00041 480 MobiDBLite consensus disorder prediction 220 239 - -
Pte2g00041 480 MobiDBLite consensus disorder prediction 211 239 - -
Pte2g00041 480 FunFam Heat shock transcription factor 1 11 108 - -
Pte2g00041 480 MobiDBLite consensus disorder prediction 366 402 - -
Pte2g00041 480 Gene3D - 13 108 IPR036388 -
Pte2g00041 480 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00041 Pte-Chr2 331604 334967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00041 18 481 HSF AT4G13980 57.996 9.87e-170 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte2g00041 HSF_DNA-bind 1.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00041 K09419 - qsa:O6P43_002600 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00041 2 331604 334967 Pte2g00041 2 331604 334967 RCT