Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00028 ATGGGTAGAGCTCCATGCTGTGACAAAGCCACCGTTAAGAGGGGACCTTGGTCTCCAGAAGAGGATGTCAAGCTTAAAGCCTACATTGAAAAATATGGAACTGGAGGCAACTGGATTGCTCTTCCTCAAAAAATAGGCCTGAAGAGATGTGGAAAGAGTTGCAGACTTCGATGGTTAAATTATTTGAGGCCAAACATCAAGCATGGTGGGTTTACTGAAGAAGAAGACAACATAATCTGCAACCTTTATATAAGTATTGGTAGCAGATGGTCCATTATTGCAGCTCAGCTACCAGGAAGGACTGATAATGATATCAAGAACTACTGGAACACCAGGTTGAAGAAGAAACTGCTTGGAAGGCGCAAGCTCACCAACTTCAATAGGCTGAATGATCCAAAAGACACAAACACAACTGAAGAAAAGTCATACTCAAATGCCCTAAGTAACTCAGCCCTTGAGAGACTTCAAATACATATGCAACTTCAGAGCCTTCACAATCAATTCTCTTTCTTCAACAATCCTCTCCTTTGGTCAAAACTGCATCCATTTCAAGAAAATATGATTCACAGCATTCCATCTGTGTCTATGAGTGATGGCAATTCTGATCCATCTCTGTCACAGGGCATGATACCTAGCCCTAATCCTGTGGAGGGAATTAAGAACGTTGAATTTTATGAACGAACATCTATTCCAAAAGCTGATGAATTAGAAGACCGCATCTTGAAAAATATTGTATCATCTCCAGAAAGTGCGGCTGTTTGTGTTGATGGGAACAACTGTATGTACTCAAATTTTGAACCAAGAGCTGTCGGTACTGAGGAGCGTAATTATACGGAAACACAAGTGCAGTATGCTCTCCAACCTGAATCGGGTGATATGGTTAACAACAGAAGTGGAGGTTATTATCTGAGGCAAGACGATCAGATTGCAGAATTGGATTGTTTCAAAGAAATGAATAGCTCAAGGAATAGCTTGATTTGGTGGTCAGATGATTTTGAAACAAAGTCAATTTCTTCATACTCTTGGGAAGAGGCTCCTTCTCTTCAGCCGCAGTCCATGTTTCCAGATCATCAAATGGATTACAACATGTAG 1092 0.4093 MGRAPCCDKATVKRGPWSPEEDVKLKAYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKLTNFNRLNDPKDTNTTEEKSYSNALSNSALERLQIHMQLQSLHNQFSFFNNPLLWSKLHPFQENMIHSIPSVSMSDGNSDPSLSQGMIPSPNPVEGIKNVEFYERTSIPKADELEDRILKNIVSSPESAAVCVDGNNCMYSNFEPRAVGTEERNYTETQVQYALQPESGDMVNNRSGGYYLRQDDQIAELDCFKEMNSSRNSLIWWSDDFETKSISSYSWEEAPSLQPQSMFPDHQMDYNM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00028 363 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte2g00028 363 CDD SANT 71 113 IPR001005 -
Pte2g00028 363 Gene3D - 70 146 - -
Pte2g00028 363 PANTHER OS09G0431300 PROTEIN 1 344 - -
Pte2g00028 363 SMART sant 67 115 IPR001005 -
Pte2g00028 363 SMART sant 13 64 IPR001005 -
Pte2g00028 363 FunFam Transcription factor MYB36 70 141 - -
Pte2g00028 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pte2g00028 363 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte2g00028 363 CDD SANT 16 62 IPR001005 -
Pte2g00028 363 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pte2g00028 363 Gene3D - 7 68 - -
Pte2g00028 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte2g00028 363 FunFam Transcription factor RAX3 7 68 - -
Pte2g00028 363 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte2g00028 363 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00028 Pte-Chr2 228373 229874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00028 1 183 MYB Transcription Factor Family AT5G57620 76.842 2.84e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte2g00028 Myb_DNA-binding 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00028 K09422 - tcc:18589215 425.631