Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00024 ATGGGAATTCATAATAGTCATACTCATAGGGGAAGCTTTATTTTCAAAGGCTTAACTGGTGGATGGGGCTTGGCTGCAAAGTTGTGTGACTCTTGTAAATCAACTTCGGCCGCTGTCTTCTGCCGAGCTGACTCAGCTTTCTTATGTATCACCTGCGACACTGAAATCCACTCCGCCAATAAGCTCACTTCCCGCCATCAGCGTGTTTGGATGTGCGAGGTTTGTGAACAGGCACCAGCCTCTGTCACGTGCCGTGCTGACGCAGCCGCTCTGTGCGTCACTTGCGACTCTGATATCCACTCAGCCAACCCCTTAGCCCGTCGTCACGAGCGGATTCCGATTGAGCCCTTCTTTGACTCCGCCGCGGATTCAGTGATCAAGTCCTCACCTGCAACCAACTTTTTAGTTCCTAACGTTATGGCTACGGATGTCAGTGTTCAGCAACATGAGTCTGAAAACGGGTTGTGGGTCATTCCAAATTCTAACTTCGGGTCCAAATGTATGGATAGCCCGGATATGATGTCTTCGGCAGAAGGTTTGCTGTTTTCTGAAGTGGACGATCCGTTTTTGGACTTCGAATATCAGAATTCCATTGAGACGAAGTCTCAGCAAACTCCATTGGGTGCGGCTGCCAACGATAGTGTTGTTCCGATTCAAATCAAAACCGGCACCGCTCCTATGCCCAAACGAAGTTGTGAGCCTTACTTCAATACTGACTTCCGCATATCGAAGTTGAGTTCTTTCAGCTACCCAACTCAGTCCATCAGTCAAAGTGTTTCATCTTCTGAAGTTGGGGTTGTTCCGGATGGAAATTCCTTGTCAGAAATCTCATTCGAATTGGGTGGAAACCTAAGCAACGGAGCTGATCCGAAAGGAACCGCTTCGACGATGACGAAAACAAACCAAGCAACCCAATTGTGTGGATTGGACAGGGAAGCGAGGGTATTGAGGTACAGAGAGAAGAGGAAGAATCGTAAGTTTGAGAAAATCATACGCTACGCTTCAAGGAAAGCGTACGCAGAAGCCAGGCCAAGGGTGAAAGGGCGGTTCGCAAAACGGACTGAAACAGAGTCGGAAGTGGACCGGTTCTTTGGCACAGCAGCGGTTTCTCCATCTGCTGCTGCTACGGGACTGATGATGGACTGCCAGTACGGCGTCGTACCCACGTTTTTAAATTAA 1179 0.4894 MGIHNSHTHRGSFIFKGLTGGWGLAAKLCDSCKSTSAAVFCRADSAFLCITCDTEIHSANKLTSRHQRVWMCEVCEQAPASVTCRADAAALCVTCDSDIHSANPLARRHERIPIEPFFDSAADSVIKSSPATNFLVPNVMATDVSVQQHESENGLWVIPNSNFGSKCMDSPDMMSSAEGLLFSEVDDPFLDFEYQNSIETKSQQTPLGAAANDSVVPIQIKTGTAPMPKRSCEPYFNTDFRISKLSSFSYPTQSISQSVSSSEVGVVPDGNSLSEISFELGGNLSNGADPKGTASTMTKTNQATQLCGLDREARVLRYREKRKNRKFEKIIRYASRKAYAEARPRVKGRFAKRTETESEVDRFFGTAAVSPSAAATGLMMDCQYGVVPTFLN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00024 392 ProSiteProfiles Zinc finger B-box type profile. 67 114 IPR000315 GO:0008270
Pte2g00024 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 369 IPR045281 GO:0009909
Pte2g00024 392 Pfam B-box zinc finger 69 114 IPR000315 GO:0008270
Pte2g00024 392 Pfam B-box zinc finger 27 68 IPR000315 GO:0008270
Pte2g00024 392 ProSiteProfiles Zinc finger B-box type profile. 24 71 IPR000315 GO:0008270
Pte2g00024 392 Pfam CCT motif 311 353 IPR010402 GO:0005515
Pte2g00024 392 CDD Bbox1_BBX-like 72 114 - -
Pte2g00024 392 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
Pte2g00024 392 CDD Bbox1_BBX-like 28 71 - -
Pte2g00024 392 SMART bboxneu5 72 114 IPR000315 GO:0008270
Pte2g00024 392 SMART bboxneu5 24 71 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00024 Pte-Chr2 200920 202805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00024 15 390 C2C2-CO-like Transcription Factor Family AT5G57660 50.653 2.91e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte2g00024 zf-B_box 4.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00024 2 200920 202805 Pte2g00024 2 200920 202805 RCT