LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g00023	ATGGCGCATTCAACTCCGGCCACAATACTCATTGGCTTGTCTTTAGACCAAGAGGACAGCCAGCAGATTCTTTCATGGGCAATAAGAGTTCTTGCTCAACAAAACGATACCATTGTTGCATTGCATGTTCTTGTCGATGAAGATAAGAGGAACCGTAAGTCTGCAAAGAGACAATCAAAACTGAGACAGGCAAAAGCTCACGTCATATCTGTGCTTGGAGAATTTGCAAGGAGCTGCCGCTCAAAGCAGGTAAATTTGGAAGCCAGAGTTAAGCTTGGTTCTACAGTAGGAAAAAGCCTAATTGAAGAAGCAAAATTCATTTCAGCAGATTTTCTTCTTCTTCGTGGCTCAAGACAGCAATCCAAAAAGAATTGGCATGAAATTTACAAGTATTGTTTTGAGCATGCCCCAGAAGAGTGCACTGTGGTCTTAATTGGGAAAGGCGGCAAAGCAAAACAACCTACACATGCCAATTCTTCAAACACTAGAGGTGAGAAAAAACAAAGCGGGGGAACAGAGTCCCCTGCTTCAAACCACAGCATCCCGCAGAAAAAGAGAGAAAGTACTTCACCAAGAACAGTATTGGACCAACTTGAGGGTGAATATACCAGCACAGAGGATGACACATTTAGCACTAGGGTCTCCACTTTCACAGAGACAACATCACTAGCTTCTACTTTACACAGCCAATCCAAGCCAAGAAAACCTCTATCGCCATGCAAACTCTTCACAGCAATCCTAGGTTCGCCCTTTCGTAAAAGGAAAAGCTCTTCATCCAACAAAGAAAAGAAGCAGCCCTTGTTGAAGTGCTTCAGCTATGAGGAAATCTCTATTGCTACAAATAATTTTGACCCAGGAAATGTAGTAGGTCGTGGTGGATATTCCGAAGTTTACAGAGGTGACCTATCTAATGGAAGAACCATAGCGGTGAAGAGGTTAGCCAAGGACAACAATGATGCTAACAAGGAAAAAGAGTTCCTCATGGAATTGGGTGTTATTGGACATGTATGCCACCCTAATACTGCAAATTTAGTTGGTTACTGCGTTGAGAACGGACTCTACCTTATTTTCCATTTATCTCAAAATGGCAATCTGGCAACTGCATTGCATGGTAGAACGTGCAAGCCACTAAATTGGTCAATCAGATACAAAATTGCCATTGGTGTTGCAAGGGGCCTGCATTACCTCCATGAATGTTGCAAACACCGAATAATTCACCGAGACATCAAAGCCTCAAATGTGCTTCTCGGTCCAGATTATGAACCTCAGATCACTGATTTTGGACTTGCAAAATGGCTTCCTAACAAATGGACTCACCATGCTGTGATTCCTATAGAGGGTACCTTTGGATACTTAGCACCGGAGTACTTTATGCATGGAACTGTTGATGAAAAGACAGATGTGTATGCTTTTGGAATACTTCTTCTGGAAATCATTACTGGGCGAAGACCTGTTGATTCTTCAAAGCAAAACCTTCTCTTATGGGCAAAGCCATTAATGGAATCAGGAAAGATGGCTGAGCTAGCTGATCCAAAATTAGAAGGCAAGTATGAGACAGAACAATTTCGTAGGGCACTGCTAACAGCATCCTACTGTGTGAGGCAGTCGCCTTTATGGCGTCCCACAATGAGCGAGGTACAGAACGTACAATTAGTTAGAATCACATTTCATCAAAGATTATTGAAACCATTAGTTGGTTTTCTGCAAATGTATAGGTGTTGGAGCTTCTCACTAAAGGTGATGATTCTGAGTCTCCAAAGAGCTGGAGGATCCCAAAGAAGTTGGCATCAGATGATGTAG	1800	0.425	MAHSTPATILIGLSLDQEDSQQILSWAIRVLAQQNDTIVALHVLVDEDKRNRKSAKRQSKLRQAKAHVISVLGEFARSCRSKQVNLEARVKLGSTVGKSLIEEAKFISADFLLLRGSRQQSKKNWHEIYKYCFEHAPEECTVVLIGKGGKAKQPTHANSSNTRGEKKQSGGTESPASNHSIPQKKRESTSPRTVLDQLEGEYTSTEDDTFSTRVSTFTETTSLASTLHSQSKPRKPLSPCKLFTAILGSPFRKRKSSSSNKEKKQPLLKCFSYEEISIATNNFDPGNVVGRGGYSEVYRGDLSNGRTIAVKRLAKDNNDANKEKEFLMELGVIGHVCHPNTANLVGYCVENGLYLIFHLSQNGNLATALHGRTCKPLNWSIRYKIAIGVARGLHYLHECCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPIEGTFGYLAPEYFMHGTVDEKTDVYAFGILLLEIITGRRPVDSSKQNLLLWAKPLMESGKMAELADPKLEGKYETEQFRRALLTASYCVRQSPLWRPTMSEVQNVQLVRITFHQRLLKPLVGFLQMYRCWSFSLKVMILSLQRAGGSQRSWHQMM*	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g00023	599	FunFam	Putative receptor-like serine/threonine-protein kinase	250	359	-	-
	Pte2g00023	599	PANTHER	OS08G0249100 PROTEIN	53	548	IPR046958	-
	Pte2g00023	599	Pfam	Protein kinase domain	287	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte2g00023	599	Coils	Coil	310	330	-	-
	Pte2g00023	599	ProSiteProfiles	Protein kinase domain profile.	283	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte2g00023	599	Pfam	Universal stress protein family	9	143	IPR006016	-
	Pte2g00023	599	MobiDBLite	consensus disorder prediction	153	184	-	-
	Pte2g00023	599	SUPERFAMILY	Protein kinase-like (PK-like)	258	549	IPR011009	-
	Pte2g00023	599	Gene3D	Phosphorylase Kinase; domain 1	253	358	-	-
	Pte2g00023	599	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	404	416	IPR008271	GO:0004672\|GO:0006468
	Pte2g00023	599	CDD	USP_Like	8	121	-	-
	Pte2g00023	599	Gene3D	HUPs	1	145	IPR014729	-
	Pte2g00023	599	FunFam	Probable receptor-like serine/threonine-protein kinase At5g57670	360	558	-	-
	Pte2g00023	599	MobiDBLite	consensus disorder prediction	150	194	-	-
	Pte2g00023	599	ProSitePatterns	Protein kinases ATP-binding region signature.	289	311	IPR017441	GO:0005524
	Pte2g00023	599	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	118	-	-
	Pte2g00023	599	Gene3D	Transferase(Phosphotransferase) domain 1	361	558	-	-
	Pte2g00023	599	SMART	serkin_6	283	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g00023	Pte-Chr2	191275	194558	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g00023	246	546	Receptor kinase-like Gene Family	AT1G53420	44.409	6.12e-70	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Pte2g00023		Pkinase	1.2e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g00023	-		-	qsa:O6P43_022283	798.89