Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00019 ATGGACAAGGTTGTTCTCAAACTCAGTACTCACAGTAGTGGCTTTCCTCCTCTTCCTGCTGCTGCTCCCTCAGAGCAACCATACGTTGTTTCTCAGCTCTCTCCACCTTCACCTAATCTACAAGTACAATCTGAGACCAGTGGCTTCAATTTGAATGAAAAGGTGAGTCCAAGTATACTACTTATCATCATCATCCTTGCTATCATCTTCTTCCTCTCTGGTTTGCTTCATCTCCTTGTGAGATTCCTTTGGAGACCACAGACTAGAGACCCTGATGACACAGAGAGTGTGACTGCTCTTCAAGGGCAACTACAGCAATTGTTTCACCTTCATGATGCTGGGGTAGACCAGTCATTCATTGACACCCTTCCTGTTTTTCATTACAAAGCTATTATAGGCTTGAAAAAACCTTTTGATTGTGCTGTTTGCTTGTGTGAATTTGAGCCTGATGATAAGCTCAGACTGCTCCCAAAATGTAGTCATGCTTTTCACATGGAGTGTATTGACACTTGGCTATTGTCCCATTCAACTTGTCCTCTCTGTAGAGCTAGCTTGCTCCCTGACTTCTCAACGAGCAATAGCTGTTCCCCCATTGTACTTGTTCTGGAATCTGGGAGTGACAGTTCCAGAGAGATAGTTCCAGATAGAGAAACTGTTATGGGAAGAACCAGCTCTGTGATAACAGCTAATTCCCATCTGGGGTGTCATGGAGAAAATGAGTTCGGATCAAGCCGCAGGGAGTTGTCGCATAAATCTTGTGACTTTGAAGTTCAAACTATAGAGAAACAAAGCTCCAATCCAACAGCAACTGTGGATTCAAAGGAGAAAGTGGTGACTGTTAAATTGGGGAAATATAAAAATGTGGATGGTGGTGAAAGTAGTATTGATAAAAATGCCGTTGATTCAAGGAGGTGTTTTTCTATGGGGTCATTTGAGTATGTCATGGATGAGAACTCTTGTTTGCAGGTACCTATCGGATCCCCCATGAAAAAACAGTCTAGTAAGAAGCCTGCTTTGCCATTAATACCAGGCCACAGACTAGCAATGTCTGAATGTGACTGTGAAGAAAGAAGAGAGTTCAAGTTTCACGGCTTTGACACAGCTAAGAAACCTGACATATCCGGGCCTGCTTCAATTATTGTGGATAATAATGGTGGTGTAATAAGGTGTAACAGGAAAGAGAGCTTCTCCATATCCAAGATTTGGCTTAGGGGGAAGAAGGACAAATCAAATTCAGAAGGTGATTCTTCCAGAAGAGCTTTTTCATTTAGGTTCCCTGTGCGGCAGTCAAATGTCATAGCTAACGGGAAGCAGCATGAAGCAGATGTGGAACAAAAGAGCGTGTCTAAGATTGATTTTAACAAGTGGGGAAGTGTAGGAAGTGAGTTCAGTTATGATGAGGAAATCCAAAGTTACGTGAGTATGGATTCTCAGCCAAGAGCTCCTTCTTTTGCAAGAAGGACTCTGCTTTGGCTCATGGGGAGAAAGAACAAGATTGTCAATCCGTCCTCTGATGTTATCTTTTAG 1527 0.4276 MDKVVLKLSTHSSGFPPLPAAAPSEQPYVVSQLSPPSPNLQVQSETSGFNLNEKVSPSILLIIIILAIIFFLSGLLHLLVRFLWRPQTRDPDDTESVTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKKPFDCAVCLCEFEPDDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSTSNSCSPIVLVLESGSDSSREIVPDRETVMGRTSSVITANSHLGCHGENEFGSSRRELSHKSCDFEVQTIEKQSSNPTATVDSKEKVVTVKLGKYKNVDGGESSIDKNAVDSRRCFSMGSFEYVMDENSCLQVPIGSPMKKQSSKKPALPLIPGHRLAMSECDCEERREFKFHGFDTAKKPDISGPASIIVDNNGGVIRCNRKESFSISKIWLRGKKDKSNSEGDSSRRAFSFRFPVRQSNVIANGKQHEADVEQKSVSKIDFNKWGSVGSEFSYDEEIQSYVSMDSQPRAPSFARRTLLWLMGRKNKIVNPSSDVIF* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00019 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 187 IPR013083 -
Pte2g00019 508 SMART ring_2 140 181 IPR001841 -
Pte2g00019 508 Pfam Ring finger domain 139 182 IPR001841 -
Pte2g00019 508 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Pte2g00019 508 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 402 - -
Pte2g00019 508 CDD RING-H2_EL5-like 139 182 - -
Pte2g00019 508 FunFam RING-H2 finger protein ATL46 102 187 - -
Pte2g00019 508 SUPERFAMILY RING/U-box 119 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00019 Pte-Chr2 159331 162006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00019 43 504 C3H Transcription Factor Family AT2G18650 46.901 5.21e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00019 - - qsa:O6P43_022263 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00019 2 159331 162006 Pte2g00019 2 159331 162006 RCT