Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02834 ATGGGACAACTATGCATGTCTACAACAGATGCAGCATTCTATGTTGTGGATGCTCATATGTGGGGCTTTCGTGAGGCCTGTGTCGAGCATCACTTGCAACATGGTCAAGGAGTTGCTGGGAGAGCATTTTTATCTCAGAACTTGTGCTTCTGTGCCAACGTTACCAAATTCTGCAAAACTGAATACCCTCTAGTCCACTATGCACTATTATTTGGGTTAACCAGCTGCTTTTCCATCTGCTTGCGAAGCAATCACACCGGAAATGATGATTATATACTGGAATTTTTTCTTCCTCATGATATCACCGACTCCAATGCTCAAATGACTTTGTTGGGTTCCCTACTGGCCACAATGAAGCAAAACTTGCGGAGTCTGAGGGTTGCCTCTGGTGTTGAACTCGAAGATTATTTATCTGTTGAGGTCATTGAAGCCAGGAACGGGGGAGTCTACTCAAGCTTTAAAAACCTTCCAATAGCCCAAGGAACTGGTCAGCCTGATGCCTTGTCAAATCAGGCTGAGAGGGGACCATTAGATTCAACAGATCAAGCTGGGCTGTATTTTAATGCTATAAACAGAATAGATAATGTTGCTGATCATATTATTAAAAACGCAGATCAGACATCATCCCTAGAAATGAAAACCATTAGTAAGCCATCTGAAAGAAAACGTGGAAAAACTGAAAAATCAATCAGTCTTGAAGTTCTCCAGAAATATTTTGCTGGGAGCCTTAAAGATGCTGCTAAGAGCCTTGGTGTGTGCCCTACAACAATGAAGCGCATTTGCAGGCAGCACGGTATATCCCGTTGGCCATCTCGAAAGATCAGAAAGGTTAATAGATCTCTCTCCAAACTGAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCTTTAAGTTTAAATTCCCTTGGCACAAATCCACTACCTATAAATGTTTCCGCAGCTCAGCCTTCTAGTTCAAATCTGTCCAATCAACCAGCATCTCCATACCCCAAGGGATCAGAACCTGTGAAAGAAAAAGGCAATGAGTTGCATAAATTTGACGTCTCTGAATACAATGGACAGGCAGAAGTGAGTGAACAACACACCTGTGTAAAATTGGGAGATCCGAAGAAACTAAATTGCCAAAAAAGTGTGGCTTTAAACAGGAGTAGAACAGGGAGTGGTTCAAGTGAAGATAGTGCTGACCCTACTTCTCATGGTTCATGCCAAGGTAGTCCACCGAAAGAAATATCACCTGTAGAGCAAACTGGCATTGTTGGGGGCTCACCAGACTTGACTTTGCGACCTACTGATGAACTTAACGAAACAGCTGCTTGCCTTCCTATTGCTGATGTTGTCAGGAGAGAGTTTTTTGGTGGAATGCAGCTTATAGAGGATTCTGGAAGTTCAAAAGATTTAAGAAATCTATGCCCTGCAGTGGCGGATACTGTTTTATTGGATGATCAGGTTCCTGAAACAGGTTGGAGTACTCATCCTACTTGTTCCAGTTTAGCTCCTACTCAAGCCGTGGATACTCCTGCTGACACCTTTAGACCTCTGTCAGGCAGGAAAGAAATGAAGAGCGTGATCATAAAGGCGACGTATAGAGAAGATATCATAAGAATTCGAATCTCCGTGAGTTTTAGTATTGTAAATTTGAAAGAAGAAGTTGCCAAAAGGTTGAAGTTGGAGGTGGGTACATTTGACATGAAGTATTTGGATGATGATCACGAATGGGTTTTGGTGGCATGCGATGCGGACCTGCAGGAATGCATGGATATAGCAAGGTCATCAGGTAGCAATGTCATCAGACTATCAATTCAAGATACAGTTTCTAATCTGGGAAGCTCGTGCGAGAGCTCAGGGGGATAG 1854 0.4304 MGQLCMSTTDAAFYVVDAHMWGFREACVEHHLQHGQGVAGRAFLSQNLCFCANVTKFCKTEYPLVHYALLFGLTSCFSICLRSNHTGNDDYILEFFLPHDITDSNAQMTLLGSLLATMKQNLRSLRVASGVELEDYLSVEVIEARNGGVYSSFKNLPIAQGTGQPDALSNQAERGPLDSTDQAGLYFNAINRIDNVADHIIKNADQTSSLEMKTISKPSERKRGKTEKSISLEVLQKYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIRKVNRSLSKLKRVIESVQGAEGALSLNSLGTNPLPINVSAAQPSSSNLSNQPASPYPKGSEPVKEKGNELHKFDVSEYNGQAEVSEQHTCVKLGDPKKLNCQKSVALNRSRTGSGSSEDSADPTSHGSCQGSPPKEISPVEQTGIVGGSPDLTLRPTDELNETAACLPIADVVRREFFGGMQLIEDSGSSKDLRNLCPAVADTVLLDDQVPETGWSTHPTCSSLAPTQAVDTPADTFRPLSGRKEMKSVIIKATYREDIIRIRISVSFSIVNLKEEVAKRLKLEVGTFDMKYLDDDHEWVLVACDADLQECMDIARSSGSNVIRLSIQDTVSNLGSSCESSGG* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02834 617 ProSiteProfiles PB1 domain profile. 522 604 IPR000270 GO:0005515
Pte1g02834 617 MobiDBLite consensus disorder prediction 311 330 - -
Pte1g02834 617 MobiDBLite consensus disorder prediction 378 411 - -
Pte1g02834 617 MobiDBLite consensus disorder prediction 311 339 - -
Pte1g02834 617 Pfam PB1 domain 523 603 IPR000270 GO:0005515
Pte1g02834 617 Gene3D - 519 602 - -
Pte1g02834 617 PANTHER PROTEIN NLP8 1 616 IPR045012 GO:0003700
Pte1g02834 617 MobiDBLite consensus disorder prediction 378 425 - -
Pte1g02834 617 CDD PB1_NLP 523 603 IPR034891 -
Pte1g02834 617 SUPERFAMILY CAD & PB1 domains 520 607 - -
Pte1g02834 617 Pfam RWP-RK domain 229 277 IPR003035 -
Pte1g02834 617 ProSiteProfiles RWP-RK domain profile. 216 297 IPR003035 -
Pte1g02834 617 SMART PB1_new 522 604 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02834 Pte-Chr1 48066695 48068731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02834 1 616 NLP Transcription Factor Family AT4G24020 48.889 2.18e-172 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pte1g02834 PB1 6.3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02834 - - qsa:O6P43_024069 722.235