Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02820 ATGGCTGATATCATCGCTCAAATCCCCACTCAGACCGATCAAGTACGTTCCAAGAAGCCTAGAAATGGAAGGAAAGCGCTCAAGGAGAAAAACTCATCCACGGATGCATCCATCCATGTGCCGGTGAAAGCTGCTGAGTTCTCTCAGTCACTATCCCATGAGACTCTTTCTAACCCTCGCTCCTCGCCCAACAAGAAGGCCGCTTTGAAGAAACAGCCCAAACAATCTTTCGACAAAGAACTACAAGAAATGCAGGACATGTTGCAGCAACTGCGACTTGAGAAGGACAAGGCGGAGGAGCTCTTGAAGGCGAAAGATGAAATCCTCAAGCAGAAGGAGCAAGAGCTCGAAACTAGGGATCGGGAGCAAGAAAAGCTTCAAGTACAGCTCAAGAAGCTTCAGAAATGGGAGGAATTCAATCCCACCGTTAGTTTCAATTTGCTGATGGACAAGGAGCTAGAAAACAAAGATAAGAAGAAGAAGAAGAGCAAAAAAAATGGGTGCGTCGAAATAAAAAGACCTTCTCCCCCTTATGCTCTTTGGTGCAAAGACCAATGGAATGAGATTAAGAAAGAGAACCCAGAAGCAGATTTCAAAGAAATCTCGAACATCTTGGGAACTAAATGGAAGACTGTCGGTGCTGAAGAGAAAAGGCCATATGAGGAGAAGTACCAAACTGAAAAGGAGGTTTATTTGCGTGTGATGGCCAAGGAAAGGCGTGAGAGTGAAGCAATGAGGCTGCTGGAAGAGGAGCATAAGCAGAAGACTGCCATGGAATTGCTCCAACAGTTTATGCATTTCAAACAGAAAGCTGAAAAAGAGTCCAAGAGAAACAAGAAAGAGAAGGACCCATTGAAGCCAAAGCAGCCTATGTCAGCGTTTTTCTTGTTCACGAATGAGAGGAGGGCTGCTCTTCTTGCAGAGACCAAGAACGTATTGGAGATTTCCAAGGTCACAAGTGAGGAGTGGAAAAAAATGACAGACGAACAAAGGAAGCCTTACGAAGAGATGGCGAAGAAGAACAAGGAGAAATATGTGCAAGATATGATGGCTTACAAGCAAAAGAAGGATGAGGAAGCTGCCAGCCTAAAGAAGGAAGAGGAAGAGCTGATGAAACTTCAGAAACAGGAAGCAATGCAATTGCTGAAGAAGAAAGAGAAGACTGAGAATTTGATCAAGAAATCTAGAGAGGCTCTCCAGAAGAACAAGCAGAGCAAGGACGACAAGAAGAATGCTGACCCTAACAAGCCAAAAAGACCCGCGTCTTCTTTCCTATTGTTCAGCAAAGAGATTAGGAAGACCTTGTTGGAGGAACGAGCGACCATCAGTAACTCGACACTGAATGCGCTTGTATCTGTGAAATGGAAGGAATTGAGTGAGGAAGAGAGACAAGTTTGGAACAAGAAGGCTGCTGAAGCGATGGAGATATACAAGAAAGGTTTGGAGGAATATAACAAATGTGTTGCTGCAGCTTTGGAAGAAAAGACAGAAGAGTGA 1497 0.4442 MADIIAQIPTQTDQVRSKKPRNGRKALKEKNSSTDASIHVPVKAAEFSQSLSHETLSNPRSSPNKKAALKKQPKQSFDKELQEMQDMLQQLRLEKDKAEELLKAKDEILKQKEQELETRDREQEKLQVQLKKLQKWEEFNPTVSFNLLMDKELENKDKKKKKSKKNGCVEIKRPSPPYALWCKDQWNEIKKENPEADFKEISNILGTKWKTVGAEEKRPYEEKYQTEKEVYLRVMAKERRESEAMRLLEEEHKQKTAMELLQQFMHFKQKAEKESKRNKKEKDPLKPKQPMSAFFLFTNERRAALLAETKNVLEISKVTSEEWKKMTDEQRKPYEEMAKKNKEKYVQDMMAYKQKKDEEAASLKKEEEELMKLQKQEAMQLLKKKEKTENLIKKSREALQKNKQSKDDKKNADPNKPKRPASSFLLFSKEIRKTLLEERATISNSTLNALVSVKWKELSEEERQVWNKKAAEAMEIYKKGLEEYNKCVAAALEEKTEE* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02820 498 Coils Coil 349 405 - -
Pte1g02820 498 Coils Coil 74 129 - -
Pte1g02820 498 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 417 485 IPR009071 -
Pte1g02820 498 SUPERFAMILY HMG-box 409 487 IPR036910 -
Pte1g02820 498 SUPERFAMILY HMG-box 158 236 IPR036910 -
Pte1g02820 498 Gene3D High mobility group box domain 399 495 IPR036910 -
Pte1g02820 498 Gene3D High mobility group box domain 153 258 IPR036910 -
Pte1g02820 498 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 171 239 IPR009071 -
Pte1g02820 498 MobiDBLite consensus disorder prediction 150 170 - -
Pte1g02820 498 Pfam HMG (high mobility group) box 287 353 IPR009071 -
Pte1g02820 498 Pfam HMG (high mobility group) box 417 485 IPR009071 -
Pte1g02820 498 Pfam HMG (high mobility group) box 171 236 IPR009071 -
Pte1g02820 498 MobiDBLite consensus disorder prediction 268 287 - -
Pte1g02820 498 MobiDBLite consensus disorder prediction 382 416 - -
Pte1g02820 498 SUPERFAMILY HMG-box 274 359 IPR036910 -
Pte1g02820 498 SMART hmgende2 286 354 IPR009071 -
Pte1g02820 498 SMART hmgende2 416 486 IPR009071 -
Pte1g02820 498 SMART hmgende2 170 240 IPR009071 -
Pte1g02820 498 Gene3D High mobility group box domain 272 356 IPR036910 -
Pte1g02820 498 MobiDBLite consensus disorder prediction 382 423 - -
Pte1g02820 498 MobiDBLite consensus disorder prediction 268 292 - -
Pte1g02820 498 MobiDBLite consensus disorder prediction 1 82 - -
Pte1g02820 498 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 11 493 IPR044601 GO:0003677
Pte1g02820 498 MobiDBLite consensus disorder prediction 48 69 - -
Pte1g02820 498 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 287 353 IPR009071 -
Pte1g02820 498 CDD HMG-box_AtHMGB6-like_rpt1 172 239 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte1g02820 HMG_box 4.1e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02820 K09273 - jre:108987126 585.874