Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02766 ATGACATACACCCTCGCCTTCAGGCGATCGGTCGGTCACCAACTTAATAAAAGTTCACACTGCAAAGTTGAAAATTTAGATCACCGATCCTATCAGAGAGACAAGAGGCAAAAGACGAGGATCCTGTTCATCTCTTGTCGTGGAGGCATATCAGGGAAATCAGGATCTCACTCTCTGCCACTGGCAAGGACCAAGAAGATCGTGAAGAAATCTGGGGACGATGTGAAAGTGATTTCGGGCGAGGCCGCCATCATTTTGACAAAAGCTAGTGAGTTTTTCATTGAGGAGTTAACCAGAAGGTCGTGCATGATTACCATGCAAGGTAAAAGGAGGACTCTATACCCAGAGGACATGGCTTCTGCTGTAGTAGCCACTGATATCTTTGATTTTCTGGTTTTGGTTTCTAGTTCCAGTAACGCACTCGCCCCTACACTCAGCATGTGGAAACAGCGGATTCTTCATGACCTGCCACACTATATACTTGACAAAATGTATTGA 498 0.4538 MTYTLAFRRSVGHQLNKSSHCKVENLDHRSYQRDKRQKTRILFISCRGGISGKSGSHSLPLARTKKIVKKSGDDVKVISGEAAIILTKASEFFIEELTRRSCMITMQGKRRTLYPEDMASAVVATDIFDFLVLVSSSSNALAPTLSMWKQRILHDLPHYILDKMY* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02766 165 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 31 135 - -
Pte1g02766 165 Gene3D Histone, subunit A 13 135 IPR009072 GO:0046982
Pte1g02766 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Pte1g02766 165 SUPERFAMILY Histone-fold 39 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02766 Pte-Chr1 47490435 47491192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02766 56 132 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.143 6.29e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pte1g02766 CBFD_NFYB_HMF 1.8e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02766 - - pop:7458162 130.568