Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Pte1g02729
ATGGGTCGTATGCACAGTCGCGGAAAAGGTATATCGGCATCTGCTTTGCCATACAAGAGGACACCTCCAAGCTGGCTCAAAATCTCTGCTCAAGACGTTGAGGAAAACATATGCAAATTTGCGAAGAAGGGATTGACACCATCCCAAATCGGTGTCATTCTCCGTGATTCTCATGGCATTGCTCAGGTTAGAAGTGTCACTGGAAGCAAAATCCTGCGTATTCTGAAAGCACATGGGCTGGCACCCGAGATTCCTGAAGATCTTTACCATTTGATTAAGAAGGCTGTTTCAATTCGCAAGCATTTGGAGAGGAATAGGAAGGATAAGGACTCTAAGTTCAGGTTGATTCTCGTCGAGAGCAGAATTCACAGGCTTGCCCGCTACTACAAGAAAACTAAAAAGCTCCCGCCTGTTTGGAAATAG
423
0.4563
MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK*
141
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Pte1g02729
140
PANTHER
RIBOSOMAL PROTEIN S15P/S13E
1
140
IPR023029
-
Pte1g02729
140
FunFam
40S ribosomal protein S13
83
140
-
-
Pte1g02729
140
Pfam
Ribosomal protein S15
74
134
IPR000589
GO:0003735|GO:0005840|GO:0006412
Pte1g02729
140
ProSitePatterns
Ribosomal protein S15 signature.
98
128
IPR000589
GO:0003735|GO:0005840|GO:0006412
Pte1g02729
140
SMART
Ribosomal_S13_N_2
1
60
IPR012606
GO:0003735|GO:0005840|GO:0006412
Pte1g02729
140
Gene3D
-
35
82
-
-
Pte1g02729
140
Pfam
Ribosomal S13/S15 N-terminal domain
1
60
IPR012606
GO:0003735|GO:0005840|GO:0006412
Pte1g02729
140
SUPERFAMILY
S15/NS1 RNA-binding domain
66
139
IPR009068
-
Pte1g02729
140
CDD
Ribosomal_S15p_S13e
70
140
IPR000589
GO:0003735|GO:0005840|GO:0006412
Pte1g02729
140
Gene3D
-
83
140
-
-
Showing 1 to 10 of 13 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Pte1g02729
Pte-Chr1
47289666
47291257
Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Pte1g02729
1
140
Cytoplasmic Ribosomal Protein Gene Family
AT4G00100
92.857
9.68e-95
268
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Pte1g02729
K02953
-
egr:104442246
280.796
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows