Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02665 ATGTTTGATTCGGTTCTTTTGGCTCTGTTTCTTCCCTGTGCTGGGATGACGGCCATTTTCATCGTCTACATGTGTTTGTTGTGGTATGTCACCAATCACAGGGACCAAAATAGTTCCCCGCCTGCTAAAATGGCTTGCGCCAAAGGGCTTTCGGCTTCGGAGCTGGGCATGTTGCCTAAGGTCACTGGAAAGGAACTCGTTTTAGGGAATGAGTGTGCTGTGTGCCTTGATGAAATCGAAAGCGAACAACCTGCTCGCCTTGTTCCTGTTTGCAAACACGGATTCCATCTAGAATGTGCCGATACATGGCTTTCTAGAAATCGGTTATGCCCTGTCTGTAGAGCCAAGCTTGATCCTCAGTTTTTCACTTCCTCCTCTGATAGTCCGTGCTGA 393 0.4809 MFDSVLLALFLPCAGMTAIFIVYMCLLWYVTNHRDQNSSPPAKMACAKGLSASELGMLPKVTGKELVLGNECAVCLDEIESEQPARLVPVCKHGFHLECADTWLSRNRLCPVCRAKLDPQFFTSSSDSPC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02665 130 Pfam Ring finger domain 70 114 IPR001841 -
Pte1g02665 130 SUPERFAMILY RING/U-box 71 120 - -
Pte1g02665 130 SMART ring_2 72 113 IPR001841 -
Pte1g02665 130 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Pte1g02665 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 120 IPR013083 -
Pte1g02665 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02665 Pte-Chr1 46835222 46836935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02665 1 131 C3H Transcription Factor Family AT5G42200 49.635 2.02e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02665 K19037 - mnt:21397463 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02665 1 46835222 46836935 Pte1g02665 1 46835222 46836935 RCT