Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02628 ATGGGAGATGATGTCTTCTCGCTTCTTAATGTCTCTGAAACTCCGCCTGGTTACTCCATGGACTTGGACTGCATGGAAGAACTGTTTCTAGATGGTTGCTGGCTGGAAACTACTAATGGATCTGAATCCCTAAATCAGGGTCACTCTGATCCGAGTTTCCTGTTTGATACTTCTTCACTTATGTGGCCTACTTTGGAGACCGGTGATGAGCTCCGCGTGGGTCATTCTCTGAAGGACAGCCAAGAGGAGATGCCTAGCGAAGGCCAGGTAGTCCCGGTGCAGGCTCTATGTGCTACTCAGAAAATGGACAATGTTCCTGACTGCTCCGACAAATCTGATATTTATTCAGTTGAAGATCCTGAATCATGGAGAAGGTTGTGGATTGCACCAAGAAGTAGTCCAGGTCCTGCATCTTCTGTGACAGATAGACTAATTAGAGCCCTTAGGTACATGAAAGAATTTATCAGAGATAGAGAGTTCCTTGCACAAATATGGGTGCCGGTGAATAGAGGGGGTAAGCTTGTTCTAAGAACTAATGATCTGCCTTTCTCCCTTGATAATACCTGCACAAGGCTTTTGAGATACCGTGACATTTCAGTAAAATATCAGTTCAAAGCTGAAGAAGATTCTAGGGAATTGGTGCCAGGATTACCTGGCCGGGTTTTCTTGGGTAAGGTTCCCGAGTGGACTCCTGATGTTCGGTTTTTCAGAAGCGATGAGTACCCACGGGTTGACCATGCTCAACAGCTTGATGTGCGTGGAACGTTAGCTCTTCCAGTTTTTGAACAAGGCAGCGAGACTTGCTTGGGTGTTATAGAGGTTGTGATGACAACTCAACAGATCATGTATCGGCCTGAACTGGAAAGTGTCTGCAGAGCACTTGAGGCTGTTAATCTTAGGAGCTCAGATTTCTTGAGCATTCAAAACAAAAAGGTTTTCAGGACTTCTGAAACTGTATTGGCCGAGATTGAAAAGGTATTGAGATCTGCATGTGAAATGCATAAATTGCCCTTAGCACAAACTTGGGTAGCTTGCGTGCCCCAAGGAAAAGAAGGCTGTCGGCACACTACTGAAAACTATGATCGCTGTGTATCCACTGTGGATCGTGCTTGCTACATAGGTGATCCCAGTGTTCAACTCTTTCATGAGGTTTGCTCTGAGCATCACTTGTTGAAAGGTCAAGGTGTTGCTGGGAGAGCATTTACGACCAATCAACCATGCTTCTCAGATGATGTGACATCCTTTTGCAAGACAGAGTATCCTTTGTCTCACCATGCCAGAGTGTTTAATTTGCGTGCTGCTGTTGCAATACGCCTTCGAAGTGTTCATACTGGAAAAGATGATTTTGTGTTGGAGTTTTTCTTGCCTACTGACTGCATTGATCATCAAGAACAGAAGAAGGTGCTAGTGTCATTATCCATGCTAATTCAAGGTGTTTGCCGTAACTTGCGCGTCTTAACTGATGAGGAAATTGAGGAAGAAAATAACTTGCTCGTAAAAGAAGCAATAGTCCATATGACAGAGCTTCCAAGTAGTGGTTCTGTTCCCTCACCACTTGCAGAGGGCAAATCAAGAGACATGACGACTTCGAAGGCATCAGAGCCAAGTCACCATCAAGATCCTTCAAATTTGAAAGGGCGCATTACGTTGGATGAGGAATGTTCTACTTTAGGTAACGTGGTAATTAGTAAAACTGGCGAAAAGAGACGCACCAAGGCTGAAAAAACTGTCACCTTACAAGTTCTTAGGCAATATTTTGCTGGAAGCCTCAAAGATGCTGCAAAAAGCATTGGAGTTTGTACAACTACTTTGAAGAGGATCTGCAGACAGCATGGGATCAAACGCTGGCCTTCTCGAAAAATAAAAAAGGTGGGCCACTCTTTACAGAAGCTCCAACGTGTGATTGATTCAGTTCACGGTGCATCAGGTGGCTTTCAAATCGATTCCTTCTATTCAACGTTCCCAGAGCTTGCATCTCCAAAAGTGTCAGGGAACAGTCCATTCTCATCATCAAAGCAAATTGATAACTCAGACCTCCCAAATATGCAGCCGGAACCTGTCAGTGGGATAAACCCTCAAGCTGTCACATCAAAATCGCCCTCATCATCACACAGTCAGAGTTCCTTTTCAAGTCATTCCTGTTCCAGCAGGACAGAGCAAAGCCCTCACCTCTTGAATGATGGCAGTAGTAGCAAAGATACCAATGCTGAAGAAAACATCGAAGAGGGTGTCCTTAAGAGGGTCAGAAGTGAAGCAGAGATGAATCCTTCAGCTCCGTATGTATCACAAGTCATGCCAAGATCCCACAGCCATGAAACCATCAGTGACCACCTGAGAACTGGGTCTTTGAGCTCCTTATCAAAGGGCAGGAGTAAAACAAATGAAAGAGGAGAAGCGCCTCGAGTAAAAGTCACGTACGGAGATGACAAAGCCCGGTTCCGCATGCATGCCGGTATGAGTTACGAGGGGCTGTTGCAAGAAATTGCTAGGCGATTCAACGTAGATGACATGAGCAAGTACAATGTTAAGTACTTGGATGATGACTCTGAGTGGGTTTTGTTGACATGTGAAGACGACTTGCAGGAGTGTATTGATGTTTGTCAATTTTCTCAAAGTCGCACCATAAAATTGTCTCTCAACTTCTGTAATCATCGGCGCAGAAATACTTGA 2670 0.4472 MGDDVFSLLNVSETPPGYSMDLDCMEELFLDGCWLETTNGSESLNQGHSDPSFLFDTSSLMWPTLETGDELRVGHSLKDSQEEMPSEGQVVPVQALCATQKMDNVPDCSDKSDIYSVEDPESWRRLWIAPRSSPGPASSVTDRLIRALRYMKEFIRDREFLAQIWVPVNRGGKLVLRTNDLPFSLDNTCTRLLRYRDISVKYQFKAEEDSRELVPGLPGRVFLGKVPEWTPDVRFFRSDEYPRVDHAQQLDVRGTLALPVFEQGSETCLGVIEVVMTTQQIMYRPELESVCRALEAVNLRSSDFLSIQNKKVFRTSETVLAEIEKVLRSACEMHKLPLAQTWVACVPQGKEGCRHTTENYDRCVSTVDRACYIGDPSVQLFHEVCSEHHLLKGQGVAGRAFTTNQPCFSDDVTSFCKTEYPLSHHARVFNLRAAVAIRLRSVHTGKDDFVLEFFLPTDCIDHQEQKKVLVSLSMLIQGVCRNLRVLTDEEIEEENNLLVKEAIVHMTELPSSGSVPSPLAEGKSRDMTTSKASEPSHHQDPSNLKGRITLDEECSTLGNVVISKTGEKRRTKAEKTVTLQVLRQYFAGSLKDAAKSIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQRVIDSVHGASGGFQIDSFYSTFPELASPKVSGNSPFSSSKQIDNSDLPNMQPEPVSGINPQAVTSKSPSSSHSQSSFSSHSCSSRTEQSPHLLNDGSSSKDTNAEENIEEGVLKRVRSEAEMNPSAPYVSQVMPRSHSHETISDHLRTGSLSSLSKGRSKTNERGEAPRVKVTYGDDKARFRMHAGMSYEGLLQEIARRFNVDDMSKYNVKYLDDDSEWVLLTCEDDLQECIDVCQFSQSRTIKLSLNFCNHRRRNT* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02628 889 CDD PB1_NLP 801 880 IPR034891 -
Pte1g02628 889 ProSiteProfiles RWP-RK domain profile. 563 644 IPR003035 -
Pte1g02628 889 Gene3D - 797 882 - -
Pte1g02628 889 MobiDBLite consensus disorder prediction 659 798 - -
Pte1g02628 889 MobiDBLite consensus disorder prediction 509 544 - -
Pte1g02628 889 ProSiteProfiles PB1 domain profile. 799 882 IPR000270 GO:0005515
Pte1g02628 889 MobiDBLite consensus disorder prediction 527 544 - -
Pte1g02628 889 Pfam RWP-RK domain 576 624 IPR003035 -
Pte1g02628 889 PANTHER PROTEIN NLP8 98 879 IPR045012 GO:0003700
Pte1g02628 889 MobiDBLite consensus disorder prediction 510 526 - -
Pte1g02628 889 MobiDBLite consensus disorder prediction 659 733 - -
Pte1g02628 889 SMART PB1_new 799 881 IPR000270 GO:0005515
Pte1g02628 889 Pfam PB1 domain 801 880 IPR000270 GO:0005515
Pte1g02628 889 SUPERFAMILY CAD & PB1 domains 795 883 - -
Pte1g02628 889 MobiDBLite consensus disorder prediction 734 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02628 Pte-Chr1 46568004 46573257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02628 20 884 NLP Transcription Factor Family AT1G20640 48.822 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pte1g02628 PB1 1.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02628 - - qsa:O6P43_016365 1027.31