Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02620 ATGCGTATTAGTAAGGACAGGAAGGTAATTTCTGGGATTCGTCACATGGACAGATGGGTTGACTTCTGCATGTTGGACGAACACAAATATGACTATTTTCTAAGTGGGGGAGGGGAAGGGACACAAAGCAATCGAGAAGAACAAGCAAAAGAAGCTGAGGATAGCAGCCTATATCTGTTCAGAAACGAGGAGATCTACAGTAGCAGAGGCTTCGAGATATGGCCAAACTCACAGTACTGTTACCCGCAGCAAGCCTCAGCCAACTTGCACTCTTTTGCAGTAGGTCCTAGTAGAAGAACCGCTTCAACATCAGACGAAAACGTTTCTGATGACATGAGTAGGAGATCTGGTTTTACGATCATGAGGTCTGGATCAGGTTTAGGAAGTAGCATGAACTGCCAGGACTGTGGGAACCAAGCCAAGAAAGATTGTTCCCATCTCAGATGCAGGACTTGCTGCAAAAGCCGAGGGTTTCAGTGCACAACCCACAACGTAAAAATGGGGTTAAAATTGGAATGGTTCGAACTGGGACAATTTCCTCCAGAAGTGAACTCTCCTGCTTTATTTCGCTGTGTGAAAGTAAACGCAATGGACACAGTTACTGATGAGCAGTATGCATATCAAACAGCCGTAAGCATCGGAGGCCATGTATTTAAGGGGATCCTCTATGATCACGGTCCTGAAGGTCCTTACGCTACCGGCGGTGAAAGCTCCTCCGGTGGAGCCGATGCGCACCTTAATGTTATAACTTCTACCACCAATACAGCCGCGAGCAATACACAAATGTTGTTGCTTGACCCTTCATTCTATTCTGCTCCACTCAATGCATTTATGGCTGGTACGCAATTTTTCCCACCCCCAAGATCCTAG 870 0.4644 MRISKDRKVISGIRHMDRWVDFCMLDEHKYDYFLSGGGEGTQSNREEQAKEAEDSSLYLFRNEEIYSSRGFEIWPNSQYCYPQQASANLHSFAVGPSRRTASTSDENVSDDMSRRSGFTIMRSGSGLGSSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCTTHNVKMGLKLEWFELGQFPPEVNSPALFRCVKVNAMDTVTDEQYAYQTAVSIGGHVFKGILYDHGPEGPYATGGESSSGGADAHLNVITSTTNTAASNTQMLLLDPSFYSAPLNAFMAGTQFFPPPRS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02620 289 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 176 275 IPR007818 GO:0003700|GO:0006355
Pte1g02620 289 Pfam Domain of unknown function (DUF702) 177 228 - -
Pte1g02620 289 Pfam Domain of unknown function (DUF702) 130 163 - -
Pte1g02620 289 NCBIfam LRP1 C-terminal domain 178 227 IPR006511 -
Pte1g02620 289 NCBIfam putative zinc finger domain, LRP1 type 132 163 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02620 Pte-Chr1 46500865 46504035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02620 92 284 C2H2 Transcription Factor Family AT5G66350 35.000 3.96e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pte1g02620 DUF702 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02620 - - pvy:116127590 263.077